View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3687_low_65 (Length: 245)

Name: NF3687_low_65
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3687_low_65
NF3687_low_65
[»] chr2 (10 HSPs)
chr2 (137-245)||(38242802-38242902)
chr2 (13-64)||(38242678-38242729)
chr2 (8-64)||(35352381-35352437)
chr2 (8-64)||(34107336-34107392)
chr2 (8-64)||(39334858-39334914)
chr2 (14-64)||(23664037-23664087)
chr2 (20-64)||(20942086-20942130)
chr2 (8-60)||(32677391-32677443)
chr2 (10-64)||(30737045-30737099)
chr2 (10-64)||(42507352-42507406)
[»] chr1 (4 HSPs)
chr1 (15-64)||(23973459-23973508)
chr1 (10-64)||(33844681-33844735)
chr1 (10-64)||(33949243-33949297)
chr1 (15-64)||(35424209-35424258)
[»] chr7 (3 HSPs)
chr7 (8-64)||(32309125-32309181)
chr7 (15-64)||(41000829-41000878)
chr7 (20-60)||(16814771-16814811)
[»] chr6 (3 HSPs)
chr6 (10-64)||(34675783-34675837)
chr6 (8-64)||(26669636-26669692)
chr6 (15-63)||(30668162-30668210)
[»] chr4 (3 HSPs)
chr4 (10-64)||(9302635-9302689)
chr4 (8-52)||(32048549-32048592)
chr4 (20-64)||(54854156-54854200)
[»] scaffold0119 (1 HSPs)
scaffold0119 (8-64)||(1101-1157)
[»] chr8 (2 HSPs)
chr8 (10-62)||(25470825-25470877)
chr8 (15-47)||(31154826-31154858)
[»] chr5 (3 HSPs)
chr5 (20-48)||(18405488-18405516)
chr5 (8-44)||(32252916-32252952)
chr5 (8-48)||(38361547-38361587)
[»] chr3 (1 HSPs)
chr3 (20-64)||(24160505-24160549)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 38242802 - 38242902
Alignment:
Q  137 gcattatggaggttggtaggggacaaaaatctttttaggaaaataaataataaataatcatctaagacaacaatggacaggcgaaagagagtcaatcatt 236  Q
    |||||||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  38242802 gcattatggaggttggtaggggacaaaa-tctttttaggaaaata-------aataatcatctaagacaacaatggacaggcgaaagagggtccatcatt 38242893  T
Q  237 cttaaatac 245  Q
    |||||||||    
T  38242894 cttaaatac 38242902  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 38242678 - 38242729
Alignment:
Q  13 aacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38242678 aacccatttattcactttaaaaaatgtgaattctagtcaccagactacttga 38242729  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 35352437 - 35352381
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||    
T  35352437 cagacaccccacttattcaccttgaaaaatgtgaattctagtcactagactacttga 35352381  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 34107336 - 34107392
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||| |||| |||||||| |||||||||||||||||||| ||| |||||||||||    
T  34107336 cagacaccccacttattcaccttgaaaaatgtgaattctagccactagactacttga 34107392  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 39334914 - 39334858
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||| |||| ||||||||||||||||| ||||||||||| ||| |||||||||||    
T  39334914 cagacatcccacttattcactttgaaaaaggtgaattctagccactagactacttga 39334858  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 23664037 - 23664087
Alignment:
Q  14 acccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||||||||||| |||||||| |||||||||| |||| |||||||||||    
T  23664037 acccatttattcaccttgaaaaaagtgaattctaatcactagactacttga 23664087  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 20942130 - 20942086
Alignment:
Q  20 ttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||    
T  20942130 ttattcaccttgaaaaaagtgaattctagtcactagactacttga 20942086  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 32677391 - 32677443
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcaccagactac 60  Q
    |||||| |||| ||||||||||||||||| ||||||| ||||||| |||||||    
T  32677391 cagacaccccacttattcactttgaaaaaggtgaattatagtcactagactac 32677443  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 30737045 - 30737099
Alignment:
Q  10 gacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| |||| |||||||| || ||||||||||||||||||||| || ||||||||    
T  30737045 gacatcccacttattcaccttaaaaaatgtgaattctagtcactaggctacttga 30737099  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 42507352 - 42507406
Alignment:
Q  10 gacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| |||| ||||||| ||||||||| ||||||||||| ||||| |||||||||    
T  42507352 gacaccccacttattcattttgaaaaaggtgaattctagacaccaaactacttga 42507406  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 23973508 - 23973459
Alignment:
Q  15 cccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| |||||||| |||||||||||||||||||| ||| |||||||||||    
T  23973508 cccacttattcacgttgaaaaatgtgaattctagccactagactacttga 23973459  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 33844681 - 33844735
Alignment:
Q  10 gacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| |||| ||||||||||||||||| ||||||| ||| ||| |||||||||||    
T  33844681 gacaccccacttattcactttgaaaaaggtgaattatagccactagactacttga 33844735  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 33949297 - 33949243
Alignment:
Q  10 gacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| |||| ||||||||||||||||| ||||||| ||| ||| |||||||||||    
T  33949297 gacaccccacttattcactttgaaaaaggtgaattatagccactagactacttga 33949243  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 35424209 - 35424258
Alignment:
Q  15 cccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    ||||||||||||| ||||||||  |||||||||| ||| |||||||||||    
T  35424209 cccatttattcaccttgaaaaagatgaattctagccactagactacttga 35424258  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 32309181 - 32309125
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||| |||| |||||||| || ||||||||||||||||| ||| |||||||||||    
T  32309181 cagacaccccagttattcaccttaaaaaatgtgaattctagccactagactacttga 32309125  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 41000829 - 41000878
Alignment:
Q  15 cccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| |||||||| || ||||||||||||||||  |||||||||||||||    
T  41000829 cccacttattcaccttaaaaaatgtgaattctaaccaccagactacttga 41000878  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 16814771 - 16814811
Alignment:
Q  20 ttattcactttgaaaaatgtgaattctagtcaccagactac 60  Q
    ||||||||||||||||||||||||||||  || ||||||||    
T  16814771 ttattcactttgaaaaatgtgaattctaaccatcagactac 16814811  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 34675837 - 34675783
Alignment:
Q  10 gacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| |||| ||||||||||| ||||||||||||||||| ||| | |||||||||    
T  34675837 gacaccccagttattcactttaaaaaatgtgaattctagccactacactacttga 34675783  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 26669692 - 26669636
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||| |||| |||||||| |||||||| ||||||||||| ||| | |||||||||    
T  26669692 cagacaccccacttattcaccttgaaaaaggtgaattctagccactaaactacttga 26669636  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 30668210 - 30668162
Alignment:
Q  15 cccatttattcactttgaaaaatgtgaattctagtcaccagactacttg 63  Q
    |||| |||||||| || ||||||||||||| ||||||| ||||||||||    
T  30668210 cccacttattcaccttaaaaaatgtgaattatagtcactagactacttg 30668162  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 9302689 - 9302635
Alignment:
Q  10 gacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||| ||||||||||||| |||||||| ||||||| || |||| |||||||||||    
T  9302689 gacaccccatttattcaccttgaaaaaggtgaattttaatcactagactacttga 9302635  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 32048592 - 32048549
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcac 52  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||    
T  32048592 cagacagcccatttattcacttt-aaaaaagtgaattctagtcac 32048549  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 54854200 - 54854156
Alignment:
Q  20 ttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||||| |||||||| ||||||||||| ||| |||||||||||    
T  54854200 ttattcaccttgaaaaaagtgaattctagccactagactacttga 54854156  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 1101 - 1157
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    |||||| |||| |||||||| |||||||| ||||||||||| ||| | |||||||||    
T  1101 cagacaccccacttattcaccttgaaaaaggtgaattctagccactaaactacttga 1157  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 25470877 - 25470825
Alignment:
Q  10 gacaacccatttattcactttgaaaaatgtgaattctagtcaccagactactt 62  Q
    |||| ||||||||||||| ||||| || ||||||||||| ||| |||||||||    
T  25470877 gacaccccatttattcaccttgaagaaggtgaattctagccactagactactt 25470825  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 31154826 - 31154858
Alignment:
Q  15 cccatttattcactttgaaaaatgtgaattcta 47  Q
    |||| ||||||||||||||||||||||||||||    
T  31154826 cccaattattcactttgaaaaatgtgaattcta 31154858  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 18405488 - 18405516
Alignment:
Q  20 ttattcactttgaaaaatgtgaattctag 48  Q
    |||||||||||||||||||||||||||||    
T  18405488 ttattcactttgaaaaatgtgaattctag 18405516  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 32252952 - 32252916
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaatt 44  Q
    |||||| || |||||||||||||||||||||||||||    
T  32252952 cagacacccaatttattcactttgaaaaatgtgaatt 32252916  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 38361547 - 38361587
Alignment:
Q  8 cagacaacccatttattcactttgaaaaatgtgaattctag 48  Q
    |||||| ||||||||||| | ||||||||||||||||||||    
T  38361547 cagacaccccatttattctccttgaaaaatgtgaattctag 38361587  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 24160549 - 24160505
Alignment:
Q  20 ttattcactttgaaaaatgtgaattctagtcaccagactacttga 64  Q
    ||||||||||| |||||  |||||||||| |||||||||||||||    
T  24160549 ttattcactttcaaaaagttgaattctagccaccagactacttga 24160505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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