View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_67 (Length: 242)
Name: NF3687_low_67
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15040221 - 15040444
Alignment:
| Q |
1 |
tatttatatttctacatacaaacaagtaaataatatggatgaaattatcaagtttctttttgttatggttatttatctttttatgttcaccattgtaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15040221 |
tatttatatttctacatacaaacaagtaaataatatggatgaaattatcaagtttctttttgttatggttatttatcttttaatgttcaccattgtaatc |
15040320 |
T |
|
| Q |
101 |
gacggtaagtttatttttgcnnnnnnnnnnnnnnnntcaaacttttctttttaatcttatacgtactcaatgttttattgcatattactaacaataannn |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15040321 |
gacggtaagtttatttttgc-aaaaaaaaaaaaaaatcaaacttttctttttaatcttatacgtactcaatgttttattgcatattactaacaataattt |
15040419 |
T |
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| Q |
201 |
nnnnnaatttgtcatcatagcgact |
225 |
Q |
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|||||||||||||||||||| |
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| T |
15040420 |
tttttaatttgtcatcatagcgact |
15040444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 14499864 - 14499745
Alignment:
| Q |
1 |
tatttatatttctacatacaaacaagtaaataatatggatgaaattatcaagtttctttttgttatggttatttatctttttatgttcaccattgtaatt |
100 |
Q |
| |
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||||||||||| |||||||||||| |||||||||||| ||| ||||||||| || |||||| |||| |||||||||||| ||| ||||||| |||| |
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| T |
14499864 |
tatttatattttgacatacaaacaaataaataatatgggtgatattatcaaggttgtttttgctatgattatttatctttacatgctcaccatcgtaacc |
14499765 |
T |
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| Q |
101 |
gacggtaagtttatttttgc |
120 |
Q |
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|||||||||||||| |||| |
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| T |
14499764 |
aacggtaagtttattattgc |
14499745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 5153296 - 5153387
Alignment:
| Q |
2 |
atttatatttctacatacaaacaagtaaataatatggatgaaattatcaagtttctttttgttatggttatttatctttttatgttcaccat |
93 |
Q |
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||||||| |||||||| |||| ||||||| ||||||| |||||||| |||||| ||| ||||||| ||||||||||||| ||||||||||| |
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| T |
5153296 |
atttatacttctacatccaaataagtaaacaatatgggtgaaattacaaagtttgtttatgttatgattatttatcttttcatgttcaccat |
5153387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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