View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_74 (Length: 237)
Name: NF3687_low_74
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_74 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 6414575 - 6414758
Alignment:
| Q |
54 |
tatagaagggcaaggagccaacgtgagtgccaagcaataaaacaaatatatttgtacaattgaaagattggaaccattttcaaatttgttttattataat |
153 |
Q |
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| T |
6414575 |
tatagaagggcaaggagccaacgtgagtgccaagcaataaaacaaatatatttgtacaattgaaagtttgggaccattttcaaatttgttttattatatt |
6414674 |
T |
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| Q |
154 |
ttttactccatatgtaacgggttaaaacataggaaaacccaataaatctgcacataacttgacttcttaataacgtacaatatc |
237 |
Q |
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| T |
6414675 |
ttttactccatatgtaacgggttaaaacataggaaaacccaataaatctgcacataacttgacttcttaataacgtacaatatc |
6414758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 6414407 - 6414445
Alignment:
| Q |
18 |
tccccaatagcttatctccaccgaatttactttacatat |
56 |
Q |
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| T |
6414407 |
tccccaatagcttatctccaccgaatttactttacatat |
6414445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 23288223 - 23288185
Alignment:
| Q |
18 |
tccccaatagcttatctccaccgaatttactttacatat |
56 |
Q |
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| T |
23288223 |
tccccaatagcttatctccaccgaatttactttacatat |
23288185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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