View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_79 (Length: 235)
Name: NF3687_low_79
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_79 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 16994668 - 16994871
Alignment:
| Q |
17 |
ctatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagct |
116 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16994668 |
ctatcttttctaatggactttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacataaagctaataagct |
16994767 |
T |
|
| Q |
117 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaaagtacaaagatacgtgaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
16994768 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatatattacaaatattgggttcaaagcacaaagatacttgaaa |
16994867 |
T |
|
| Q |
217 |
attt |
220 |
Q |
| |
|
|||| |
|
|
| T |
16994868 |
attt |
16994871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 17017903 - 17018106
Alignment:
| Q |
17 |
ctatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagct |
116 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17017903 |
ctatcttttctaatggactttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacataaagctaataagct |
17018002 |
T |
|
| Q |
117 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaaagtacaaagatacgtgaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
17018003 |
agatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatatattacaaatattgggttcaaagcacaaagatacttgaaa |
17018102 |
T |
|
| Q |
217 |
attt |
220 |
Q |
| |
|
|||| |
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|
| T |
17018103 |
attt |
17018106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 17048408 - 17048623
Alignment:
| Q |
1 |
ttcatagaagaaaggactatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaac |
100 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17048408 |
ttcatagaagaaaagactatcttttctaatggatattagaccaaatag----atattctcatgcatgaagcgttcaaaggaactctaagagacaatcaac |
17048503 |
T |
|
| Q |
101 |
aaaaagctaataagctagatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaaagt |
200 |
Q |
| |
|
|||||||||||||||| | | || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17048504 |
aaaaagctaataagctggttttgatagactagttttctgcgttggctaaatgatgcatagtataatgttctatatatagtacaaatattgggttcaaagt |
17048603 |
T |
|
| Q |
201 |
acaaagatacgtgaaaattt |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
17048604 |
acaaagatacgtgaaaattt |
17048623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 17042563 - 17042757
Alignment:
| Q |
22 |
ttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagctagatc |
121 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
17042563 |
ttttctaatggattttagaccaaatag----atattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagctggatc |
17042658 |
T |
|
| Q |
122 |
tgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaaagtacaaagatacgtgaaaattt |
220 |
Q |
| |
|
|| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17042659 |
tgatagacttgttttatgcgttggctaaataatgcatagtataatgttctatatatagtacaaatattgggttcaaagtacaaagatacgtgaaaattt |
17042757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 17036732 - 17036921
Alignment:
| Q |
16 |
actatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagc |
115 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
17036732 |
actatcttttctaatggatattagaccaaatacata----ttctcatgcatgaagcgttcaaaggaactctaagaaacaatcaacaaaaagctaataagc |
17036827 |
T |
|
| Q |
116 |
tagatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaaagtacaaagata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
17036828 |
tagatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatatagtacaaatattgggttcaaagcacaaagata |
17036921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 17002688 - 17002884
Alignment:
| Q |
16 |
actatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagc |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
17002688 |
actatcttttctaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacataaagctaatcagc |
17002787 |
T |
|
| Q |
116 |
tagatctgttagactagtttgctgcgttggctaaataatgcatagtataatgttctatatataatacaaatattgggttcaaagtacaaagatacgtgaa |
215 |
Q |
| |
|
||||||| | ||||| ||||||| ||| |||||||||||| || | | ||||||||||| | | |||||| ||||||||||||||||||||||| |
|
|
| T |
17002788 |
tagatctacttcactagcttgctgccttgactaaataatgcagag-ctgaaattctatatatagt--atatattgtcttcaaagtacaaagatacgtgaa |
17002884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 17025069 - 17025256
Alignment:
| Q |
1 |
ttcatagaagaaaggactatcttttttaatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaac |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17025069 |
ttcatagaagaaaatactatcttttctaatggattttaaaccaaagagatat---ttctcatgcatgaagcgttcaaaggaactctaagagacaatcaac |
17025165 |
T |
|
| Q |
101 |
aaaaagctaataagctagatctg--ttagactagtttgctgcgttggctaaataatgcata-gtataatgttctatatataatacaaatat |
188 |
Q |
| |
|
|||||||| || ||||||||||| | | |||| ||||||| |||| || || ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
17025166 |
aaaaagcttatcagctagatctgattcatgctagcttgctgccttggttatattatgcataggtataatgttctatatatagtacaaatat |
17025256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 17032029 - 17032220
Alignment:
| Q |
27 |
taatggattttagaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagctaataagc--tagatctgt |
124 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| ||||||| |
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|
| T |
17032029 |
taatggattttaaaccaaatagatagatattctcatgcatgaagcgttcaaaggaactctaagagacaatcaacaaaaagtttatgagctatagatctac |
17032128 |
T |
|
| Q |
125 |
tagactagtttgctgcgttggctaaataatgcatag-tataatgttctatatataatacaaatattgggttcaaagtacaaagatacgtgaaaattt |
220 |
Q |
| |
|
| ||||| || |||||||||||||||||||| |||| ||||||||||||| || | |||| | |||||||||||||| ||| |||||||||| |
|
|
| T |
17032129 |
ttcactagctt-----gttggctaaataatgcatagctatattgttctatatatagtaaagatatcgtgttcaaagtacaaatatatgtgaaaattt |
17032220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 17017288 - 17017338
Alignment:
| Q |
170 |
ctatatataatacaaatattgggttcaaagtacaaagatacgtgaaaattt |
220 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||| |||||||||||||| |
|
|
| T |
17017288 |
ctatatatagtacagatattgtgttcaaagtacaaatatacgtgaaaattt |
17017338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 17017213 - 17017255
Alignment:
| Q |
74 |
tcaaaggaactctaagagacaatcaacaaaaagctaataagct |
116 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
17017213 |
tcaaaggaactctaagagacaatgaataaaaagctaatcagct |
17017255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 16988137 - 16988186
Alignment:
| Q |
171 |
tatatataatacaaatattgggttcaaagtacaaagatacgtgaaaattt |
220 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
16988137 |
tatatatagtacatatattgtgttcaaagtacaaatatacgtgtaaattt |
16988186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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