View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_87 (Length: 219)
Name: NF3687_low_87
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_87 |
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| [»] scaffold1337 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 30578378 - 30578575
Alignment:
| Q |
1 |
attctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagttaacggagct |
100 |
Q |
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| T |
30578378 |
attctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagttaacggagct |
30578477 |
T |
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| Q |
101 |
gtgcacaaaggtatgccgcacaaattctacca-ggtcgtaccagtcgtgtctgcaatgtgactaagcgggtcattggtgttgaagtcaataagcaagt |
197 |
Q |
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| T |
30578478 |
gtgcacaaaggtatgccgcacaaattctaccacggtcgtaccggtcgtgtctggaatgtgactaagcgtgccattggtgttgaagtcaataagcaagt |
30578575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 21257189 - 21257252
Alignment:
| Q |
2 |
ttctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatat |
66 |
Q |
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|||||| |||| |||| |||||| |||||||||||| |||| || |||||||||| ||||||||| |
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| T |
21257189 |
ttctcttgtccattccccaagaaaggaacaatagccctagctacatacctcagga-ctatcatat |
21257252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 140
Target Start/End: Original strand, 43828413 - 43828552
Alignment:
| Q |
2 |
ttctctcgtcccttccgcaagaagggaacaatagccttagccacctacctcaggacctatcatatcggcgactatgtcgatattagagttaacggagctg |
101 |
Q |
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| T |
43828413 |
ttctctcgtccattcaggaagaagggtacaatcgcccttgccacttacctcagaacctatcacatcggcgattatgttgatgtcagggttaacggtgctg |
43828512 |
T |
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| Q |
102 |
tgcacaaaggtatgccgcacaaattctacca-ggtcgtac |
140 |
Q |
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| T |
43828513 |
tacacaagggtatgcctcataagttctaccacggtcgtac |
43828552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1337 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1337
Description:
Target: scaffold1337; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 639 - 688
Alignment:
| Q |
47 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
96 |
Q |
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| T |
639 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 18359 - 18310
Alignment:
| Q |
47 |
tacctcaggacctatcatatcggcgactatgtcgatattagagttaacgg |
96 |
Q |
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| T |
18359 |
tacctcagaacttatcatatcggtgactatgtcgatattaggattaacgg |
18310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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