View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_88 (Length: 217)
Name: NF3687_low_88
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 39446173 - 39446362
Alignment:
| Q |
10 |
aggagcacagagaaccataacaaataccgactaatatcgaaccgacatatagagcgcccggaagtccataagcaatcactacatgaccaatgctcatggt |
109 |
Q |
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| T |
39446173 |
aggaccactgagaaccataacaaataccgactaatatcgaaccgacatatagagcgcctggaagtccataagcaatcactacatgaccaatgctcatggt |
39446272 |
T |
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| Q |
110 |
catcaaagtgatcaccatnnnnnnnggtcttgcccatcctcttgtgtgtaaaaaatagtccgagacataaccagctccaaaacggccaag |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39446273 |
catcaaagtgatcaccataaaaaaaggtcttgcccatcctcttgtgtgtaaaaaatagtccgagacataaccagctccaaaacggccaag |
39446362 |
T |
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