View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3687_low_9 (Length: 454)
Name: NF3687_low_9
Description: NF3687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3687_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 8167958 - 8168334
Alignment:
| Q |
16 |
gcaaaggcagtgcatttcttacatactggtgttataccaggatgttttagcaaccaattaaagacaaagagtgtgttacttgatgaacactacattccaa |
115 |
Q |
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| T |
8167958 |
gcaaaggcagtgcatttcttacatactggtgttataccaggatgttttagcaaccaactaaagacaaagagtgtgttacttgatgaacactgcattccaa |
8168057 |
T |
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| Q |
116 |
aactaagtgactatggtatgtccatcatcaaagaggatatcgaaaagtttgaggtatgtttaatcaatccaatatagctgttctatca-ttatctaatat |
214 |
Q |
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| T |
8168058 |
aactaagtgactatggtatttccatcatcagagaggatatcgaaaagttcgaggtatgtttaatcaatccattgttgctgttataccatttatctaatat |
8168157 |
T |
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| Q |
215 |
gattttgaccatttagtgactcatattctttctatgtttgtatgcagacaaagagtgagaagaaatcaaaatcatggtatgatactataataacttaaat |
314 |
Q |
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| T |
8168158 |
gattttgatc-ttgactgattctgttgctttctatgtttgcatacagacaaagagtgagaagaaatcaaaatcatggtatgatactataataacttaaat |
8168256 |
T |
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| Q |
315 |
ctactttactagaatgacttgcaactggattcttatgtacctttttgggattgaatttttacgattcagttacatttt |
392 |
Q |
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| T |
8168257 |
ctactttactagaatgacttgcaactggattattatgtacctttttgggattgaatttttacaattcagttacatttt |
8168334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 10976650 - 10976532
Alignment:
| Q |
19 |
aaggcagtgcatttcttacatactggtgttataccaggatgttttagcaaccaattaaagacaaagagtgtgttacttgatgaacactacattccaaaac |
118 |
Q |
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| T |
10976650 |
aaggcggtgcattttttacatactggaattataccaggttgttttagaaacaaattaaagacaaacaatgttttacttgacgaacatcgctttcccaaac |
10976551 |
T |
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| Q |
119 |
taagtgactatggtatgtc |
137 |
Q |
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| T |
10976550 |
taagtgactatggtatgtc |
10976532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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