View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3688_high_1 (Length: 613)

Name: NF3688_high_1
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3688_high_1
NF3688_high_1
[»] chr8 (3 HSPs)
chr8 (16-338)||(33823785-33824107)
chr8 (429-596)||(33823527-33823694)
chr8 (208-311)||(28437310-28437413)
[»] chr5 (2 HSPs)
chr5 (155-312)||(13481015-13481172)
chr5 (232-289)||(18198182-18198239)
[»] chr4 (3 HSPs)
chr4 (178-290)||(23663582-23663694)
chr4 (265-311)||(35721705-35721751)
chr4 (200-290)||(45763667-45763757)
[»] chr7 (1 HSPs)
chr7 (172-311)||(8132030-8132169)
[»] chr2 (4 HSPs)
chr2 (184-287)||(41335315-41335418)
chr2 (233-311)||(3591840-3591918)
chr2 (262-312)||(3945955-3946005)
chr2 (205-290)||(24563321-24563406)
[»] chr1 (1 HSPs)
chr1 (260-290)||(34645998-34646028)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 33824107 - 33823785
Alignment:
Q  16 aggatttgactttgtggtggaacaacgtgttcgagatcaaacccttgaccacttgttgaccttccaataaactccgaagaagaaactgttttcatcttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824107 aggatttgactttgtggtggaacaacgtgttcgagatcaaacccttgaccacttgttgaccttccaataaactccgaagaagaaactgttttcatcttgt 33824008  T
Q  116 ttgtagctatttttgccgtgttgtttgaggcaccgatgctcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctccttttgtcca 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824007 ttgtagctatttttgccgcgttgtttgaggcaccgatgctcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctccttttgtcca 33823908  T
Q  216 ataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacacctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823907 ataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacacctt 33823808  T
Q  316 agatgttgttggttttctgatga 338  Q
    |||||||||||||||||||||||    
T  33823807 agatgttgttggttttctgatga 33823785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 429 - 596
Target Start/End: Complemental strand, 33823694 - 33823527
Alignment:
Q  429 aagtaaaactcctccattaatggaagagtagtttctttcacttgatgtgagggtagcactagcaccattaccaaagagttcttggatcatctttctttag 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823694 aagtaaaactcctccattaatggaagagtagtttctttcacttgatgtgagggtagcactagcaccattaccaaagagttcttggatcatctttctttag 33823595  T
Q  529 ttttgttgtggatctagctacaacaatccnnnnnnnnnncagaaaagcaaaagggtggtgagtctttt 596  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  33823594 ttttgttgtggatctagctacaacaatccaaaaaaaaaacagaaaagcaaaagggtggtgagtctttt 33823527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 28437413 - 28437310
Alignment:
Q  208 tttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttg 307  Q
    ||||||||||| |  | |||||| ||||||||||| |  || ||||||||  | ||||||||||||||||| |||||||||||||  || || |||||||    
T  28437413 tttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgtagttgttgtagtaacagaattttgtgtttggagaatcacatcttg 28437314  T
Q  308 gaca 311  Q
    ||||    
T  28437313 gaca 28437310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 312
Target Start/End: Complemental strand, 13481172 - 13481015
Alignment:
Q  155 tcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagt 254  Q
    |||||||||| |  || ||||| || ||||||||||| | |||||| || |||||||||||||| |  |  ||||| ||||||||||| |  || || ||    
T  13481172 tcttgttttttctacatccaccaccgattggaacgttgcgtaaagctccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgt 13481073  T
Q  255 gaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacac 312  Q
     | | |||||||||||||||| || ||||||||||| | |||||| ||||||||||||    
T  13481072 taagctatagttgttgtagtagcagaattttgtgttgggtgagtcacatcttggacac 13481015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 18198239 - 18198182
Alignment:
Q  232 ttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgt 289  Q
    |||||||| || ||||||||  ||| ||| |||||||||||||| |||||||||||||    
T  18198239 ttgcagaagtgtcgaggctgtttgacgttgtagttgttgtagtagcaaaattttgtgt 18198182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 23663694 - 23663582
Alignment:
Q  178 ccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaac 277  Q
    |||| |||||| ||||| |  ||||| ||| ||||||||||||| |  |||||||||||||| || ||||| ||||||||| | ||||||||| |||| |    
T  23663694 ccaactggaacatttctaagtgcaccccctcttgtccaataacgcctacatgtcttgcagaagtgacgaggttgagtgaggctgtagttgttgaagtagc 23663595  T
Q  278 aaaattttgtgtt 290  Q
    ||||||| |||||    
T  23663594 aaaatttagtgtt 23663582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 35721751 - 35721705
Alignment:
Q  265 ttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggaca 311  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||||    
T  35721751 ttgttgtagtaacaaaactttgtgtttgttgaatcacatcttggaca 35721705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 45763667 - 45763757
Alignment:
Q  200 cacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtt 290  Q
    |||| ||||| ||||| ||||| |||||  | |||||||| || |||||||| | |||||| ||||| ||||||||||| ||||| |||||    
T  45763667 caccgcctttagtccagtaacgtcggcagtttttgcagaagtgacgaggctgggagaggttgtagttattgtagtaacagaatttggtgtt 45763757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 311
Target Start/End: Original strand, 8132030 - 8132169
Alignment:
Q  172 ccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgt 271  Q
    ||||||||||  ||||||||||  |  ||||| ||||| |||||||||||||| || || ||||| |||||||| || || |  || || ||||||||||    
T  8132030 ccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgt 8132129  T
Q  272 agtaacaaaattttgtgtttgatgagtcgcatcttggaca 311  Q
    |||| || || |||||||||| ||| || |||||||||||    
T  8132130 agtagcagaactttgtgtttgttgattcacatcttggaca 8132169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 41335418 - 41335315
Alignment:
Q  184 ggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaatt 283  Q
    ||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||| || || |  || ||||  | ||||||||||||||||||||||||||    
T  41335418 ggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaatt 41335319  T
Q  284 ttgt 287  Q
    ||||    
T  41335318 ttgt 41335315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 3591918 - 3591840
Alignment:
Q  233 tgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggaca 311  Q
    |||||||||||||||| ||||    ||||||||||||||||||||||||||| || ||||  ||||| |||||||||||    
T  3591918 tgcagaaatggcgaggttgagacttgttatagttgttgtagtaacaaaatttggtatttgtagagtcacatcttggaca 3591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 3945955 - 3946005
Alignment:
Q  262 tagttgttgtagtaacaaaattttgtgtttgatgagtcgcatcttggacac 312  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  3945955 tagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacac 3946005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 24563406 - 24563321
Alignment:
Q  205 ccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtt 290  Q
    ||||| ||||| || ||||||||  | || |||||||| |||||||||| |||||| |||||||||||||| || ||||| |||||    
T  24563406 cctttggtccagtagcgacggcagtttttacagaaatgacgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgtt 24563321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 260 - 290
Target Start/End: Complemental strand, 34646028 - 34645998
Alignment:
Q  260 tatagttgttgtagtaacaaaattttgtgtt 290  Q
    |||||||||||||||||||||||||||||||    
T  34646028 tatagttgttgtagtaacaaaattttgtgtt 34645998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University