View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3688_high_10 (Length: 237)
Name: NF3688_high_10
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3688_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 53328924 - 53329141
Alignment:
| Q |
5 |
tttcaaatttgatatatatattttgtaaccgcacttgagctctagcattaacgatggttaattgctttgataagagttgttaaacgttgatttgaatttt |
104 |
Q |
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| T |
53328924 |
tttcaaatttgatatatatattttgtaaccgcacttgagctctagcattaacgatgattaattgctttgataagagttgttaaacgttgatttgaatttt |
53329023 |
T |
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| Q |
105 |
caatccagtaattaatttcatgaatttttgttatctgtttctttcttc-nnnnnnnnngcgaaagaacttaaaactgtgctggcgcttaactaattgaac |
203 |
Q |
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| T |
53329024 |
caatccagtaattaatttcatgaatttttgttatctgtttcttttttcttctttttttgcgaaagaacctaaaactgtgctgtcgcttaactaattaaac |
53329123 |
T |
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| Q |
204 |
ctttaaaatgttgattag |
221 |
Q |
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| T |
53329124 |
ctttaaaatgttgattag |
53329141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 41483110 - 41483052
Alignment:
| Q |
75 |
taagagttgttaaacgttgatttgaattttcaatccagtaattaatttcatgaattttt |
133 |
Q |
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| T |
41483110 |
taagagttgttaatcgttgatttgaattttcaatccagtaattaatttcatcaattttt |
41483052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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