View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3688_high_11 (Length: 208)
Name: NF3688_high_11
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3688_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 14457252 - 14457299
Alignment:
| Q |
78 |
cctctcccaaaa-cccagtacctcttaaacaacaccaacaaataattt |
124 |
Q |
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| T |
14457252 |
cctctcccaaaaacccagtacctcttaaacaacaacaacaaataattt |
14457299 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 185
Target Start/End: Original strand, 14457329 - 14457360
Alignment:
| Q |
154 |
cgaaatcacaaatttcatttcatgcaattgta |
185 |
Q |
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| T |
14457329 |
cgaaatcacaaatttcatttcatgcaattgta |
14457360 |
T |
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