View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3688_high_12 (Length: 204)
Name: NF3688_high_12
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3688_high_12 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5100319 - 5100114
Alignment:
| Q |
1 |
tttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatgagttata |
100 |
Q |
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| T |
5100319 |
tttattttttagtaaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatgagttata |
5100220 |
T |
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| Q |
101 |
acattc--atgtcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagttcattcaccataacatttgtctctaaggttgtgacttct |
198 |
Q |
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| T |
5100219 |
acattcatatgtcttttaacaaattggacaggacagtcttcaacctagtttagcaatgtgttcattcaccataacatttgtctctaaggttgtgacttct |
5100120 |
T |
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| Q |
199 |
tacttt |
204 |
Q |
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|||||| |
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| T |
5100119 |
tacttt |
5100114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 5135560 - 5135388
Alignment:
| Q |
34 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcat--gtcttttaacaaattggacagga |
131 |
Q |
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| T |
5135560 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtattatgagttataacattcatatgtcttctaacaaattggacagga |
5135461 |
T |
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| Q |
132 |
cagtcttcaacctagtgtagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttt |
204 |
Q |
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| T |
5135460 |
cagtcttcaacctagtttagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttt |
5135388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 2939566 - 2939723
Alignment:
| Q |
2 |
ttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataa |
101 |
Q |
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|||| ||||||| |||||||||||| ||||||||| |||| | ||||| || ||||||||||||||||||||||||||||||| ||||| ||| ||||| |
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| T |
2939566 |
ttatttttgagtaaacatttattttggtccctaacagtgt--gtcgctcacactatagaccctgaatgatcagctatttgaaccatactacgagctataa |
2939663 |
T |
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| Q |
102 |
cattcatg-tcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagtt |
160 |
Q |
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| T |
2939664 |
catttatgtttttttaacaaattgcacaggacagacttcaatctagtttagtaataagtt |
2939723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5242059 - 5241981
Alignment:
| Q |
1 |
tttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatt |
79 |
Q |
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||||| ||||| | |||| ||||||| |||||||| |||| |||| |||||| ||||| || |||||||||||||||| |
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| T |
5242059 |
tttatttttgattgaacaattattttggtccctaatagtgtgaggcactctcactatagtccttgaatgatcagctatt |
5241981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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