View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3688_low_3 (Length: 522)
Name: NF3688_low_3
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3688_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 279 - 521
Target Start/End: Complemental strand, 33422610 - 33422366
Alignment:
| Q |
279 |
ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatctgtggtca |
378 |
Q |
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| T |
33422610 |
ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatttgtggtca |
33422511 |
T |
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| Q |
379 |
atgtttgctttgggcacagcaacaataactgtatctttcttttcacctttcttgaagaaaatgactgttggaatacttcaaatcccataccgagtagctg |
478 |
Q |
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| T |
33422510 |
atg-ttgcttttggcacagcaccaataactgtatctttcttttcaccgttcttgaagaaaatgacagttggaatacttcgaatcccataccgagtagcaa |
33422412 |
T |
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| Q |
479 |
ttgaaggactttcatcagtat---gtttgtaacacttgagcttacc |
521 |
Q |
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| T |
33422411 |
ctgaaggactttcatcagtgttgagtttgtaacacttgagcttacc |
33422366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 33858615 - 33858439
Alignment:
| Q |
19 |
ggttcggctccttgaagctgttgctgcaggtgnnnnnnnnggctggtccggttttaaggggggttttt-gtatagcttctgttttggtgattggctttgt |
117 |
Q |
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| T |
33858615 |
ggttcggctccttgaagctgttgctgcaggtgtttttt--ggctggtccggttttaaggggggttttttgtatagcttctgttttggtgattggctttgt |
33858518 |
T |
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| Q |
118 |
ccgcgcctcccttgtaactgtgcnnnnnnnnnnnctgcttgttctttgcttctgctgtgttttgtaacagaaggcaggact |
198 |
Q |
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| T |
33858517 |
ccgcgcctcccttgtaactgtg--tgctttttttctacttgttctttgcttctgctgtgttttgtaacagaaggcaggact |
33858439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 515
Target Start/End: Complemental strand, 20543679 - 20543549
Alignment:
| Q |
388 |
ttgggcacagcaacaataactgtatctttcttttcacctttcttgaagaaaatgactgttggaatacttcaaatcccataccgagtagctgttgaaggac |
487 |
Q |
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| T |
20543679 |
ttgggcacagctccaataactgtgtcttttttctcaccatctttgaagatcataactgtcggaatacttcgaattccgtaccgggtagcagttgaaggac |
20543580 |
T |
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| Q |
488 |
tttcatcagtat---gtttgtaacacttgag |
515 |
Q |
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| T |
20543579 |
tctcatcggtattgagtttgtaacacttgag |
20543549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 16989885 - 16989933
Alignment:
| Q |
198 |
ttgttttgttgtaacagctagcctctttttgcacttctggtgcttggctt |
247 |
Q |
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| T |
16989885 |
ttgtttggttgtaacagctagc-tcttttagcacttccggtgcttggctt |
16989933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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