View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3688_low_4 (Length: 489)
Name: NF3688_low_4
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3688_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 187 - 476
Target Start/End: Complemental strand, 27241658 - 27241374
Alignment:
| Q |
187 |
tttgcattaaaatgagcacttattttgcattaaaaccttccaattgctttgttttcttcaaattgcattcaaccaccattttggcaaactcttcccctag |
286 |
Q |
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| T |
27241658 |
tttgcattaaaatgagcactaattttgcattaaaaccttccaattgctttgttttcttcaaattgcattcaaccaccattttggcaaactcttcccctag |
27241559 |
T |
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| Q |
287 |
ggacaggtaaatcaaatttcttcctctcaccattttgaattgcattaagaagaatggtgacacattgattcagtccaactagatttctgccgatcatatt |
386 |
Q |
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| T |
27241558 |
gg-----taaatcaaatttcttcctctcaccattttgaattgcattaagaagaatggtgacacattgattcagtccaactagctttctgccgatcatatt |
27241464 |
T |
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| Q |
387 |
cttcatgctaactaccacttccttcaagtccaacccatcagcattagggaagcaactaaccatcaccttacacttgaccatgttcatctc |
476 |
Q |
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| T |
27241463 |
cttcatgctaactaccacttccttcaagtccaacccatcagcgttagggaagcaactgaccatcaccttacacttgaccatcttcatctc |
27241374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 296 - 461
Target Start/End: Complemental strand, 27249160 - 27248995
Alignment:
| Q |
296 |
aatcaaatttcttcctctcaccattttgaattgcattaagaagaatggtgacacattgattcagtccaactagatttctgccgatcatattcttcatgct |
395 |
Q |
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| T |
27249160 |
aatcgaatttcttcctctcgccattttgaattgcattaagaagaatggtgacacattgagtccgtccaactatatttctgcggatcatatccttcattcc |
27249061 |
T |
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| Q |
396 |
aactaccacttccttcaagtccaacccatcagcattagggaagcaactaaccatcaccttacactt |
461 |
Q |
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| T |
27249060 |
tactgccacattcttcaagtacaacccatcagcattagagaagcaagtgaccctcacctgacactt |
27248995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 27241777 - 27241687
Alignment:
| Q |
73 |
gtcaatgaagttagagactattagcaaaaccttcaatcactcaatgttaagggtcatgctaactaactattgttcggagcactggttaagg |
163 |
Q |
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| T |
27241777 |
gtcaatgaagttagagactattagcaaaaccttcaatcactcaatgttaagggtcatgctaactaactattgttcggagcactagttaagg |
27241687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 7509116 - 7509182
Alignment:
| Q |
292 |
ggtaaatcaaatttcttcctctcaccattttgaattgcattaagaagaatggtgacacattgattca |
358 |
Q |
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| T |
7509116 |
ggtaaatcaaatttcttcctctccccattttgaattgcattaaggagaatggtggcaccttgcttca |
7509182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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