View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3688_low_7 (Length: 307)
Name: NF3688_low_7
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3688_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 4493420 - 4493711
Alignment:
| Q |
1 |
aaaatgagaaagtttttgaacttttggaatcaaaacttactatgagcaaaaaatagagaagaaaaagcaaaccacatagtggtgctgatccgagttttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4493420 |
aaaatgagaaagtttttgaacttttggaatcaaaacttactatgagcaaaaaatagagaagaaaaagcaaaccacatagtggtgctgatctgagttttca |
4493519 |
T |
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| Q |
101 |
atggtccgccaaattcaggattcaagtgatgttccaagaaccagattataatcattgtgtagatgaggataccaatagttgcaatccatatttcccagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4493520 |
atggtccgccaaattcaggattcaagtgatgttccaagaaccagattataatcattgtgtagatgaggataccaatagttgcaatccatatttcccagct |
4493619 |
T |
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| Q |
201 |
aaatggtttcataatcaaccatgctgaatcttctgtttcagccggaaatataagtgataaacctgactcagtatatggttgagtgaatgata |
292 |
Q |
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| T |
4493620 |
aaatggtttcataatcaaccatgctgaatcttcagtttctgccggaaatataagtgataaacctgactcagtatatggttgagtgaatgata |
4493711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 4498969 - 4499259
Alignment:
| Q |
1 |
aaaatgagaaagtttttgaacttttggaatcaaaacttactatgagcaaaaaatagagaagaaaaagcaaaccacatagtggtgctgatccgagttttca |
100 |
Q |
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|||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
4498969 |
aaaatgagaaaggttt-gaactttacaaatcaaaacttactatgagcaaaaaatagagaagaaaaagcaaaccacatagtggtgctgatctgggttttca |
4499067 |
T |
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| Q |
101 |
atggtccgccaaattcaggattcaagtgatgttccaagaaccagattataatcattgtgtagatgaggataccaatagttgcaatccatatttcccagct |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4499068 |
ctggtccaccaaattcaggattcaagtgatgttccaagaaccaaatgataatcattgtgtagatgaggataccaatagttgcaatccatatttcccagct |
4499167 |
T |
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| Q |
201 |
aaatggtttcataatcaaccatgctgaatcttctgtttcagccggaaatataagtgataaacctgactcagtatatggttgagtgaatgata |
292 |
Q |
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||||||||||||||||||||||||||||||||| ||||| || |||||||| || ||||| || |||||||||||||||||||||||||||| |
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| T |
4499168 |
aaatggtttcataatcaaccatgctgaatcttcagtttctgctggaaatatgagcgataatcccgactcagtatatggttgagtgaatgata |
4499259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 4506290 - 4506568
Alignment:
| Q |
14 |
ttttgaacttttggaatcaaaacttactatgagcaaaaaatagagaagaaaaagcaaaccacatagtggtgctgatccgagttttcaatggtccgccaaa |
113 |
Q |
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|||||||||| || |||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| || ||| ||||| |
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| T |
4506290 |
ttttgaacttctgtaatctagacttactatgagcaaaaaatagagaagtaaaagcaaaccacatagtggtgctgatctgggttttcactgttccaccaaa |
4506389 |
T |
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| Q |
114 |
ttcaggattcaagtgatgttccaagaaccagattataatcattgtgtagatgaggataccaatagttgcaatccatatttcccagctaaatggtttcata |
213 |
Q |
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|||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||| | |||||| ||||| ||||||||| |||||| |
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| T |
4506390 |
ttcaggattcaagtgatgttccaagaaccaaatgattatcattgtgtagatgaggataccaacagtagtaatccacatttctgtgctaaatggcttcata |
4506489 |
T |
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| Q |
214 |
atcaaccatgctgaatcttctgtttcagccggaaatataagtgataaacctgactcagtatatggttgagtgaatgata |
292 |
Q |
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| ||||||||||||||| || | || || |||| ||| ||||||| |||||||| |||||||||||||||||||||| |
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| T |
4506490 |
aacaaccatgctgaatcatcactctctgctggaagtatgagtgataggcctgactcggtatatggttgagtgaatgata |
4506568 |
T |
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