View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3688_low_8 (Length: 303)

Name: NF3688_low_8
Description: NF3688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3688_low_8
NF3688_low_8
[»] chr3 (2 HSPs)
chr3 (189-271)||(15994984-15995066)
chr3 (124-177)||(15995203-15995256)
[»] chr2 (2 HSPs)
chr2 (124-177)||(38951098-38951151)
chr2 (189-238)||(38950912-38950961)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 189 - 271
Target Start/End: Complemental strand, 15995066 - 15994984
Alignment:
Q  189 aattcttctacttgctacttgatttatctacttccaacatctattgttcccgttacatacataattgaagtttctttgtttat 271  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  15995066 aattcttctacttgctactttatttatctacttccaacatctattgttcctgttgcatacataattgaagtttctttgtttat 15994984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 15995256 - 15995203
Alignment:
Q  124 ttttagcataatacaagaatgcattatttgtatgtctccatacttaacatataa 177  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  15995256 ttttagcataatacaagaatgcattatttgtaggcctccatacttaacatataa 15995203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 38951151 - 38951098
Alignment:
Q  124 ttttagcataatacaagaatgcattatttgtatgtctccatacttaacatataa 177  Q
    ||||| |||||||||||||||||||||||||| | |||||||||||||||||||    
T  38951151 ttttaccataatacaagaatgcattatttgtaggcctccatacttaacatataa 38951098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 38950961 - 38950912
Alignment:
Q  189 aattcttctacttgctacttgatttatctacttccaacatctattgttcc 238  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  38950961 aattcttctacttactactttatttatctacttccaacatcgattgttcc 38950912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University