View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3689_high_2 (Length: 468)
Name: NF3689_high_2
Description: NF3689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3689_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 6 - 266
Target Start/End: Original strand, 30720597 - 30720852
Alignment:
| Q |
6 |
gtcgaagaatatatgtaacaccatcatggatgcttgaaaattagtgtattctctttacgagcaactatatacatatgcaattgtacacttcagaaaagta |
105 |
Q |
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| T |
30720597 |
gtcgacgaatttatgtaacaccatcatggatgcttgaaaattagtgtattctctttacgaggaactatatacatatgtaactgtacacttgagaaaagta |
30720696 |
T |
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| Q |
106 |
tgaaatattaccaaaattcatgaatcatgttgaaagtcccatattgaaacccttaaagnnnnnnnctatgaaggtgtggacaaaccgtgaatattgaatc |
205 |
Q |
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| T |
30720697 |
tgaaatattaccaaaattcatgaatcatgttgaaagtaccatattgaaacccttaaagaaaaaaactatgaaggtgtggacaaaccgtg-----ttatgc |
30720791 |
T |
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| Q |
206 |
attttggtaacacaacaaaaaatataaatgaatatgctcatggtagattgaaacaatattt |
266 |
Q |
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| T |
30720792 |
attttggtaacacaacaaaaaatataaatgaatatgctcatggtagattgaaacaatattt |
30720852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 366 - 452
Target Start/End: Original strand, 30720894 - 30720984
Alignment:
| Q |
366 |
caattgattacatctcaatgtcaacatcaatatgttcaatccgtgagctagaaccttctactcc----ctcacaatcactttgacaacaac |
452 |
Q |
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| T |
30720894 |
caattgattacatctcaatgtcaacatcaatatgttcaatccgtgagctagaaccttctactccctcactcacattcactttgacaacaac |
30720984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 30720853 - 30720886
Alignment:
| Q |
287 |
cgggttgtggttgggaagctatacacaacatgtt |
320 |
Q |
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| T |
30720853 |
cgggttgtggttgggaaactatacacaacatgtt |
30720886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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