View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3689_high_5 (Length: 254)
Name: NF3689_high_5
Description: NF3689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3689_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 25467013 - 25466786
Alignment:
| Q |
10 |
caatgaaaatggtatttaaacatatattagttcttacctctgatgatactatgctttagtaatgttgtgtgattatttaattcgaagcctacgacaacat |
109 |
Q |
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| T |
25467013 |
caatgaaaatggtatttaaacatatattagttcttacctctgatgatactatgctttagtaatgttgtgtgattatttaattcgaagcctacgacaacat |
25466914 |
T |
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| Q |
110 |
ttatagaacatagcttaatgattcttttccaaagttttgtaagaatattgctcatgcgtgtcttctacttcacaaagggtttggttttcccactttttct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25466913 |
ttatagaacatagcttaatgattcttttccaaagttttgaaagaatattgctcatgcgtgtcttctacttcacaaagggtttggttttcccactttttct |
25466814 |
T |
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| Q |
210 |
tttgctttggtttatggtgtatatatat |
237 |
Q |
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| T |
25466813 |
tttgctttggtttatggtatatatatat |
25466786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 36234862 - 36235069
Alignment:
| Q |
10 |
caatgaaaatggtatttaaacatatattagttcttacctctgatgatactatgctttagtaatgttgtgtgattatttaattcgaagcctacgacaacat |
109 |
Q |
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|||| ||||| | ||||||||||||| |||| |||||||| ||||||||||| | ||| ||||||||||||| ||| | ||||||||| || |
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| T |
36234862 |
caataaaaataggatttaaacatatacaagtttttacctcttatgatactatgat-----aatcttgtgtgattatt-----cgacgactacgacaatat |
36234951 |
T |
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| Q |
110 |
ttatagaacatagcttaatgattcttttccaaagttttgtaagaatattgctcatgcgtgtcttctacttcacaaagggtttggttttcccactttttct |
209 |
Q |
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| T |
36234952 |
ttatataagatagcttaatgattcttttccaaagttttgaaagaatatttctcatgcgtgtcttctacttcacaaagggtttggttttcccactttttct |
36235051 |
T |
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| Q |
210 |
tttgctttggtttatggt |
227 |
Q |
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| T |
36235052 |
tttgctttggtttatggt |
36235069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 36216999 - 36217204
Alignment:
| Q |
10 |
caatgaaaatggtatttaaacatatattagttcttacctctgatgatactatgc-tttagtaatgttgtgtgattatttaattcgaagcctacgacaaca |
108 |
Q |
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|||| ||||||| |||||||| |||| ||||||||||||||||| ||| ||||| ||||||||| ||||||||||||| ||||||| |
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| T |
36216999 |
caataaaaatgggatttaaacgtatactagttcttacctctgattataatatgcctttagtaatcttgtgtgattatt-aattcgac------------- |
36217084 |
T |
|
| Q |
109 |
tttatagaacatagcttaatgattcttttccaaagttttgtaaga----atattgctcatgcgtgtcttctacttcacaaagggtttggttttcccactt |
204 |
Q |
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| T |
36217085 |
---atagaacatagcttaatgattcttttccaaagttttgaaagaaagaatattgctcatgtgtgtcttctacttcacaaagggtttggttttgccactt |
36217181 |
T |
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| Q |
205 |
tttcttttgctttggtttatggt |
227 |
Q |
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| T |
36217182 |
cttcttttgctttgatttatggt |
36217204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 35900887 - 35900739
Alignment:
| Q |
14 |
gaaaatggtatttaaacatatattagttctt--acctctgatgatactatgc-tttagtaatgt-----tgtgtgattatttaattcgaagcctacgaca |
105 |
Q |
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|||||| |||||||||||||||||| ||||| |||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||| |||| |
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| T |
35900887 |
gaaaattgtatttaaacatatattaattcttttacctctcatgatactatgcctttagtaatctattcttgtgtgattatttaattcgaagcctatgaca |
35900788 |
T |
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| Q |
106 |
acatt------tatagaacatagcttaatgattcttttccaaagttttg |
148 |
Q |
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| T |
35900787 |
acattaatttatatagaacattgcttaatgattcttttccaaagttttg |
35900739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 35900738 - 35900698
Alignment:
| Q |
183 |
aaagggtttggttttcccactttttcttttgctttggttta |
223 |
Q |
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| T |
35900738 |
aaaggatttggttttcccaccttttcttttgctttggttta |
35900698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 9770649 - 9770774
Alignment:
| Q |
23 |
atttaaacatatattagttcttacctctgatgatactatgc-tttagtaatgttgtgtgattatttaattcgaagcctacgacaacatttatagaacata |
121 |
Q |
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| T |
9770649 |
atttaaacatacactagtccttacctctgatgataatatgcgtttagtaatcttctgtgattattga-ttcgacgcctacaataacattcgtagagcaca |
9770747 |
T |
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| Q |
122 |
gcttaatgattcttttccaaagttttg |
148 |
Q |
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||||||||||||||||||||||||||| |
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| T |
9770748 |
gcttaatgattcttttccaaagttttg |
9770774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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