View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3689_high_6 (Length: 252)

Name: NF3689_high_6
Description: NF3689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3689_high_6
NF3689_high_6
[»] chr3 (17 HSPs)
chr3 (167-244)||(42745070-42745147)
chr3 (142-221)||(37273141-37273220)
chr3 (135-226)||(21367667-21367759)
chr3 (167-221)||(24281079-24281133)
chr3 (177-251)||(34707450-34707524)
chr3 (182-252)||(45541618-45541688)
chr3 (135-243)||(39602172-39602280)
chr3 (166-221)||(5391910-5391965)
chr3 (178-244)||(2152139-2152205)
chr3 (178-220)||(21754760-21754802)
chr3 (167-244)||(43115088-43115165)
chr3 (167-215)||(3044249-3044297)
chr3 (132-244)||(14548682-14548794)
chr3 (167-243)||(26330285-26330361)
chr3 (167-215)||(29771870-29771918)
chr3 (167-215)||(31010434-31010482)
chr3 (183-227)||(54837012-54837056)
[»] chr7 (14 HSPs)
chr7 (86-221)||(12110310-12110446)
chr7 (133-226)||(19022563-19022657)
chr7 (185-251)||(6633914-6633980)
chr7 (159-226)||(11619136-11619204)
chr7 (132-243)||(33678777-33678889)
chr7 (168-227)||(15740389-15740448)
chr7 (177-243)||(34035959-34036026)
chr7 (184-251)||(36537957-36538024)
chr7 (118-187)||(420342-420412)
chr7 (173-243)||(44686968-44687038)
chr7 (182-251)||(30535610-30535679)
chr7 (170-215)||(39771796-39771841)
chr7 (168-221)||(44615088-44615141)
chr7 (203-251)||(23214923-23214971)
[»] chr6 (22 HSPs)
chr6 (167-226)||(33887862-33887921)
chr6 (117-243)||(20368142-20368269)
chr6 (185-243)||(26559201-26559259)
chr6 (167-244)||(7931687-7931764)
chr6 (177-245)||(4080958-4081026)
chr6 (167-251)||(34403887-34403971)
chr6 (177-252)||(769180-769255)
chr6 (181-244)||(27693400-27693463)
chr6 (132-227)||(31624087-31624182)
chr6 (168-227)||(1575928-1575987)
chr6 (135-214)||(2160928-2161007)
chr6 (167-226)||(4515992-4516051)
chr6 (167-221)||(30863278-30863332)
chr6 (167-244)||(2460112-2460189)
chr6 (160-221)||(3217174-3217235)
chr6 (191-236)||(5730733-5730778)
chr6 (167-211)||(6536979-6537023)
chr6 (132-244)||(8035109-8035221)
chr6 (167-215)||(9667975-9668023)
chr6 (182-226)||(10657449-10657493)
chr6 (169-221)||(30604930-30604982)
chr6 (184-232)||(33832246-33832294)
[»] chr8 (15 HSPs)
chr8 (167-244)||(13000385-13000462)
chr8 (163-243)||(11770973-11771053)
chr8 (134-242)||(41442416-41442524)
chr8 (178-243)||(8629499-8629564)
chr8 (135-215)||(11185221-11185301)
chr8 (177-228)||(779038-779089)
chr8 (87-244)||(2482817-2482972)
chr8 (183-226)||(4390261-4390304)
chr8 (138-221)||(7918430-7918513)
chr8 (167-217)||(41606891-41606941)
chr8 (131-216)||(2594986-2595071)
chr8 (168-221)||(30191125-30191178)
chr8 (160-220)||(1112260-1112320)
chr8 (165-221)||(9835884-9835940)
chr8 (167-243)||(30918145-30918220)
[»] chr2 (30 HSPs)
chr2 (133-226)||(26202026-26202120)
chr2 (168-244)||(8187414-8187490)
chr2 (152-244)||(24347739-24347831)
chr2 (159-225)||(28039312-28039378)
chr2 (134-216)||(29316764-29316846)
chr2 (136-221)||(40158719-40158804)
chr2 (167-244)||(42817337-42817414)
chr2 (118-226)||(43279507-43279615)
chr2 (165-221)||(10285890-10285946)
chr2 (167-251)||(14666580-14666664)
chr2 (78-217)||(33931558-33931698)
chr2 (167-226)||(41817200-41817259)
chr2 (167-233)||(1647268-1647334)
chr2 (133-187)||(20952353-20952407)
chr2 (119-200)||(29628748-29628830)
chr2 (118-187)||(41241150-41241220)
chr2 (182-251)||(5902503-5902572)
chr2 (177-226)||(12140574-12140623)
chr2 (136-189)||(40279408-40279461)
chr2 (162-215)||(41809235-41809288)
chr2 (169-226)||(43530090-43530147)
chr2 (182-227)||(44606088-44606133)
chr2 (142-214)||(1939323-1939395)
chr2 (167-215)||(7283028-7283076)
chr2 (142-226)||(8017441-8017525)
chr2 (132-208)||(16867736-16867812)
chr2 (167-215)||(34652026-34652074)
chr2 (204-252)||(40481903-40481951)
chr2 (204-252)||(40512577-40512625)
chr2 (168-244)||(41041983-41042059)
[»] chr4 (18 HSPs)
chr4 (168-221)||(20936213-20936266)
chr4 (167-250)||(1137744-1137827)
chr4 (78-221)||(2996515-2996659)
chr4 (83-202)||(17884015-17884135)
chr4 (132-200)||(49202642-49202710)
chr4 (142-242)||(53673621-53673721)
chr4 (162-221)||(1965968-1966027)
chr4 (167-226)||(28300278-28300337)
chr4 (173-236)||(37863923-37863986)
chr4 (132-226)||(23459625-23459719)
chr4 (167-221)||(46110235-46110289)
chr4 (169-226)||(22662226-22662283)
chr4 (167-244)||(27123313-27123390)
chr4 (192-249)||(45214428-45214485)
chr4 (168-216)||(6466035-6466083)
chr4 (167-243)||(23819121-23819197)
chr4 (171-215)||(29263406-29263450)
chr4 (184-244)||(42641600-42641660)
[»] chr1 (24 HSPs)
chr1 (154-249)||(6262039-6262134)
chr1 (118-226)||(3233993-3234103)
chr1 (177-243)||(7119899-7119965)
chr1 (132-218)||(7218061-7218147)
chr1 (158-243)||(14443472-14443557)
chr1 (162-251)||(17420230-17420319)
chr1 (168-221)||(35925723-35925776)
chr1 (159-226)||(15942726-15942794)
chr1 (165-221)||(31118073-31118129)
chr1 (132-215)||(29007706-29007789)
chr1 (132-243)||(34290233-34290344)
chr1 (163-226)||(35669000-35669063)
chr1 (156-241)||(41184613-41184699)
chr1 (167-244)||(4868432-4868508)
chr1 (132-213)||(10809342-10809423)
chr1 (177-226)||(29635389-29635438)
chr1 (135-200)||(38503470-38503535)
chr1 (184-220)||(19389951-19389987)
chr1 (118-224)||(24915031-24915139)
chr1 (134-226)||(26779905-26779996)
chr1 (167-227)||(33108600-33108660)
chr1 (170-226)||(37811887-37811943)
chr1 (177-221)||(42336657-42336701)
chr1 (155-226)||(51929517-51929589)
[»] chr5 (18 HSPs)
chr5 (168-226)||(499710-499768)
chr5 (78-244)||(18857359-18857528)
chr5 (134-226)||(17368675-17368767)
chr5 (132-221)||(34205236-34205327)
chr5 (132-243)||(37588322-37588433)
chr5 (200-243)||(39983696-39983739)
chr5 (132-226)||(15402808-15402902)
chr5 (133-226)||(29925839-29925933)
chr5 (160-221)||(4619732-4619793)
chr5 (184-221)||(5531083-5531120)
chr5 (167-244)||(6593331-6593408)
chr5 (167-251)||(7907913-7907998)
chr5 (132-189)||(15074765-15074822)
chr5 (132-244)||(2568655-2568767)
chr5 (167-239)||(8089968-8090040)
chr5 (132-208)||(33533536-33533612)
chr5 (141-221)||(37611199-37611279)
chr5 (141-221)||(37787929-37788009)
[»] scaffold0286 (1 HSPs)
scaffold0286 (135-214)||(16110-16189)


Alignment Details
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 42745070 - 42745147
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||||| ||||||||||| |||||| | |||||||    
T  42745070 cttatggaaataagatgaaaacaacttatgaacatgtcataagttgtttacataaattcttctaaataatatcacaag 42745147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 37273141 - 37273220
Alignment:
Q  142 tgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||| | || ||| ||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| |||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataa 37273220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 21367667 - 21367759
Alignment:
Q  135 tataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaac-atatcataagttgttttcataaattct 226  Q
    |||||||||||||| | || ||| ||||| |||||||| || |||| |||||||| ||||||||| || ||||||| ||||||||||| ||||    
T  21367667 tataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcataagctgttttcataagttct 21367759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 24281079 - 24281133
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||| || ||||||||||||||||| || | ||||||||||||||||||||||    
T  24281079 cttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataa 24281133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 34707524 - 34707450
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    ||||||||||||||||| || |||| ||| |||||||||||| || |||| | ||| ||||||||||||| ||||    
T  34707524 taagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaagcgcttat 34707450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 45541618 - 45541688
Alignment:
Q  182 tgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttata 252  Q
    |||||||| ||| ||||||| ||||||| ||||||||||| ||||| |||| ||||| ||||| |||||||    
T  45541618 tgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttata 45541688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 39602280 - 39602172
Alignment:
Q  135 tataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaata 234  Q
    |||||| ||||||| | || ||| || || |||||||| || |||||||||||||| || ||||||| ||||||| ||| |||||||  ||||  |||||    
T  39602280 tataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataagctgtcttcataagctcttccaaata 39602181  T
Q  235 gtctcacaa 243  Q
    | |||||||    
T  39602180 gcctcacaa 39602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 5391910 - 5391965
Alignment:
Q  166 acttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||| || ||||||||||||| ||| ||||||| ||||||| |||||||||||    
T  5391910 acttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 5391965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 2152205 - 2152139
Alignment:
Q  178 aagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||||||||| |||  |||||| |||||||||||||||||||| | | | || ||||||||||||    
T  2152205 aagttgaaaacagcttacgaacatgtcataagttgttttcataaaatatctcaattagtctcacaag 2152139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 21754760 - 21754802
Alignment:
Q  178 aagttgaaaacaacttgtgaacatatcataagttgttttcata 220  Q
    |||||||||||||||  ||||||| ||||||||||||||||||    
T  21754760 aagttgaaaacaactgatgaacatgtcataagttgttttcata 21754802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 43115088 - 43115165
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    ||||||||| |||| ||||||||| || || |||| ||||||||||||| |||||| ||||  ||| | |||||||||    
T  43115088 cttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaag 43115165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 3044297 - 3044249
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    |||||| || ||||||||||||| ||| ||||||| |||||||||||||    
T  3044297 cttatgaaaataagttgaaaacagcttatgaacatgtcataagttgttt 3044249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 14548794 - 14548682
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 231  Q
    ||||||||||||||||| | || |||  |||| | ||||||||| |||| |||||||| | | | || || ||||| |||||||||||||  ||| | ||    
T  14548794 agctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctctctcaa 14548695  T
Q  232 atagtctcacaag 244  Q
    | |||||||||||    
T  14548694 acagtctcacaag 14548682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 26330361 - 26330285
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    ||||||||| |||  |||||| ||| | ||||||| ||| |||||||||||||||  |||| |||| ||||||||||    
T  26330361 cttatggaaataacctgaaaagaacctatgaacatgtcagaagttgttttcataagctcttctaaacagtctcacaa 26330285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 29771870 - 29771918
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    ||||||||| ||||||||||||||||| || |||| || ||||||||||    
T  29771870 cttatggaaataagttgaaaacaacttatggacatgtcctaagttgttt 29771918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 31010434 - 31010482
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    |||||||||||||| |||||||| ||| || |||| |||||||||||||    
T  31010434 cttatggaattaagctgaaaacagcttatggacatgtcataagttgttt 31010482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 54837056 - 54837012
Alignment:
Q  183 gaaaacaacttgtgaacatatcataagttgttttcataaattctt 227  Q
    |||||||| || ||||||| ||||||| |||||||||||||||||    
T  54837056 gaaaacaagttatgaacatgtcataagctgttttcataaattctt 54837012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 12110310 - 12110446
Alignment:
Q  86 ctatttctattacacacgataaaattgagtcgaattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagttga 184  Q
    |||||||||||||||| ||||||||  |||| |||||| || ||||| |||||||| ||||||| | || ||| ||| | |||||||| || |||  | |    
T  12110310 ctatttctattacacaagataaaataaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaa 12110409  T
Q  185 aaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||  |||||||||| |||||||||||||||||||    
T  12110410 aaacagtttgtgaacatgtcataagttgttttcataa 12110446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 19022657 - 19022563
Alignment:
Q  133 gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 226  Q
    |||||||||||||||  | || ||||||||| |||||||| || ||||||||| ||||||| |||| | | ||||||||||||||||||||||||    
T  19022657 gctataagttgtttttataagctatattggagaacttatgaaaataagttgaagacaacttatgaaaattgtcataagttgttttcataaattct 19022563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 6633914 - 6633980
Alignment:
Q  185 aaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    |||||||||||| |||| ||||||||||||| |||||||||||  | | |||||||||||| |||||    
T  6633914 aaacaacttgtggacatttcataagttgtttccataaattcttccatacagtctcacaagcatttat 6633980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 11619204 - 11619136
Alignment:
Q  159 ttggaaaacttatggaattaagttgaaaacaacttgtgaacata-tcataagttgttttcataaattct 226  Q
    ||||| |||||||| |||||||||||||| | ||| |||| ||  ||||||||||||||||||||||||    
T  11619204 ttggagaacttatgaaattaagttgaaaaaagcttatgaaaattgtcataagttgttttcataaattct 11619136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 33678777 - 33678889
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaac-atatcataagttgttttcataaattctttta 230  Q
    ||||||||| ||||||| | || ||| ||||||||||| || || ||||||||||||| ||  ||||| || | ||||||||||||||||| ||||   |    
T  33678777 agctataagctgttttcataagctatcttggaaaacttgtgaaaataagttgaaaacatctcatgaacaatgttataagttgttttcataagttctccca 33678876  T
Q  231 aatagtctcacaa 243  Q
    ||| |||||||||    
T  33678877 aattgtctcacaa 33678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 15740448 - 15740389
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 227  Q
    ||||| || |||||| |||||| ||| ||||||| ||||||||||||||||||| |||||    
T  15740448 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 15740389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 34035959 - 34036026
Alignment:
Q  177 taagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    ||||||||||||||||| |||||| | ||||||||| ||||||||| |||||  || |||||||||||    
T  34035959 taagttgaaaacaacttatgaacaatgtcataagttattttcataagttcttccaagtagtctcacaa 34036026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 36537957 - 36538024
Alignment:
Q  184 aaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    |||||||||| ||||||| ||||||||||||| ||||| |||| | ||| | ||||||||| ||||||    
T  36537957 aaaacaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttat 36538024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 420342 - 420412
Alignment:
Q  118 aattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaa 187  Q
    |||||| |||||||| |||||||||||||| | | || ||||||||| |||||||| || |||||||||||    
T  420342 aattgtttttgtatatgctataagttgtttccgtaagctatattggagaacttatgaaaataagttgaaaa 420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 44686968 - 44687038
Alignment:
Q  173 gaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    ||||||||||||||||| ||  || |||| ||||||||||||| |||||  ||||||||  ||||||||||    
T  44686968 gaattaagttgaaaacagctcatggacatgtcataagttgtttccataagctcttttaagaagtctcacaa 44687038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 30535610 - 30535679
Alignment:
Q  182 tgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    |||||||| |||  |||||||||||||||||||||||||| ||||   ||| |||||| |||| ||||||    
T  30535610 tgaaaacagcttacgaacatatcataagttgttttcataagttctccaaaacagtctctcaagtgtttat 30535679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 39771796 - 39771841
Alignment:
Q  170 atggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    |||||| ||||||||||||| ||| || ||||||||||||||||||    
T  39771796 atggaaataagttgaaaacagcttatggacatatcataagttgttt 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 44615141 - 44615088
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||| |||  |||||||| |||||| |||| |||||||||||||||||||    
T  44615141 ttatggaaataacgtgaaaacagcttgtggacatgtcataagttgttttcataa 44615088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 23214923 - 23214971
Alignment:
Q  203 tcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    |||||||||||||||||||||||| | ||| ||||||| ||| ||||||    
T  23214923 tcataagttgttttcataaattctctcaaacagtctcataagtgtttat 23214971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 33887862 - 33887921
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  33887862 cttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattct 33887921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 243
Target Start/End: Complemental strand, 20368269 - 20368142
Alignment:
Q  117 gaattgtctttgtat-agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    ||||||| ||||||| || |||||||||||||| | || | | ||||| |||||||| || ||||||||||  | ||| ||||||| |||||||||||||    
T  20368269 gaattgtttttgtatgagttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttt 20368170  T
Q  216 tcataaattcttttaaatagtctcacaa 243  Q
    |||||| ||||   ||||||||| ||||    
T  20368169 tcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 26559259 - 26559201
Alignment:
Q  185 aaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    ||||| ||||||||||||||||||||||||||||||| |||||  ||| ||||||||||    
T  26559259 aaacagcttgtgaacatatcataagttgttttcataagttcttccaaacagtctcacaa 26559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 7931764 - 7931687
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||| |||| |||| ||||||||||||  |||||| |||||||||||||||||||  |||| ||||| ||||||||||    
T  7931764 cttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaatggtctcacaag 7931687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 4080958 - 4081026
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagc 245  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||| ||| | |||||||  |||||||    
T  4080958 taagttgaaaacaacttatgaacatggcataagttgttttcataaaatctctcaaatagtgccacaagc 4081026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 34403887 - 34403971
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    ||||||||| |||| |||||||| ||| ||||||| ||||||||||||||| ||| ||||  |||| ||||| ||||| ||||||    
T  34403887 cttatggaaataaggtgaaaacaccttatgaacatgtcataagttgttttcttaacttctcctaaacagtctaacaagtgtttat 34403971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 769180 - 769255
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttata 252  Q
    ||||||||||||| ||| ||||||| ||||||| ||||||||||| ||| |  ||| ||||||||||| |||||||    
T  769180 taagttgaaaacagcttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaagtgtttata 769255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 27693463 - 27693400
Alignment:
Q  181 ttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    ||||||| | ||| ||||||| ||||||||||||| |||||||||| | |||||||||||||||    
T  27693463 ttgaaaatagcttatgaacatgtcataagttgtttccataaattctctcaaatagtctcacaag 27693400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 31624087 - 31624182
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 227  Q
    ||||||||| ||||||| |  | ||| ||||| || ||||| || ||||||||||||| ||| ||||||| ||||||| ||||||||||| |||||    
T  31624087 agctataagctgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttctt 31624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 1575928 - 1575987
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 227  Q
    ||||| || |||||| |||||| ||| ||||||| ||||||||||||||||||| |||||    
T  1575928 ttatgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcataagttctt 1575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 2161007 - 2160928
Alignment:
Q  135 tataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgtt 214  Q
    |||||||||||||||| || | | |||||||  |||||||| ||||||||||||||||| || |||| || |||| ||||    
T  2161007 tataagttgttttcctaagctgtcttggaaagattatggaaataagttgaaaacaacttatggacatgtcgtaaggtgtt 2160928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 4515992 - 4516051
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    |||| |||| ||||||||||||||||  ||||||||| | ||||||||| ||||||||||    
T  4515992 cttacggaaataagttgaaaacaactcatgaacatataagaagttgtttacataaattct 4516051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 30863278 - 30863332
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||| ||| |||| |||||||||||| || |||| |||||||||||||||||||    
T  30863278 cttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataa 30863332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 2460189 - 2460112
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    ||||||||| |||||||||||||||||    |||| ||||||||||||| |||||  ||| | ||| |||||||||||    
T  2460189 cttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaag 2460112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 3217235 - 3217174
Alignment:
Q  160 tggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||||||||||| |||| |||||||||||| |  || | |||| ||||||||||||||    
T  3217235 tggaaaacttatggaaataagctgaaaacaacttatcgacgtgtcatcagttgttttcataa 3217174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 5730733 - 5730778
Alignment:
Q  191 cttgtgaacatatcataagttgttttcataaattcttttaaatagt 236  Q
    ||||||||||| ||||||||||||| |||||| ||||| |||||||    
T  5730733 cttgtgaacatgtcataagttgtttccataaactctttcaaatagt 5730778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 6536979 - 6537023
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagtt 211  Q
    ||||||||| |||| |||||||||||| ||||||| |||||||||    
T  6536979 cttatggaaataagctgaaaacaacttatgaacatgtcataagtt 6537023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 8035221 - 8035109
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 231  Q
    ||||| ||||||||||| | || |||  | |||| |||| | || |||||||||||||| || ||| ||| ||||||||||||||| ||| ||||   ||    
T  8035221 agctagaagttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgttttcttaagttctcccaa 8035122  T
Q  232 atagtctcacaag 244  Q
    |||||||| ||||    
T  8035121 atagtctctcaag 8035109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 9668023 - 9667975
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    ||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  9668023 cttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 9667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 10657449 - 10657493
Alignment:
Q  182 tgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    |||||||||||| ||||||| | |||| |||||||||||||||||    
T  10657449 tgaaaacaacttatgaacatgttataaattgttttcataaattct 10657493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 30604930 - 30604982
Alignment:
Q  169 tatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||| ||||||||||| ||||| ||||||| ||||| |||||||| ||||    
T  30604930 tatggaaataagttgaaaagaacttatgaacatttcataggttgttttaataa 30604982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 33832294 - 33832246
Alignment:
Q  184 aaaacaacttgtgaacatatcataagttgttttcataaattcttttaaa 232  Q
    |||||||||| | ||||| ||||||||||||||||||| |||| |||||    
T  33832294 aaaacaacttataaacatgtcataagttgttttcataagttctcttaaa 33832246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 13000462 - 13000385
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    ||||||||| |||| ||||||||||||||| |||| ||||||||||||  |||||| ||||  |||||||||||||||    
T  13000462 cttatggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaag 13000385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 11771053 - 11770973
Alignment:
Q  163 aaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    |||||||||  || ||||||||||||||| | |  |||||||||||||||||||||||| |||||||||| ||||| ||||    
T  11771053 aaaacttataaaaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacagtctaacaa 11770973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 41442524 - 41442416
Alignment:
Q  134 ctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaat 233  Q
    ||||||| ||||||| | || |||||||||||||||||  |  |||| |||||||| | | ||||||| |||||| |||||||||||| |||| | |||     
T  41442524 ctataagctgttttcataagctatattggaaaacttatataggtaagctgaaaacagcatatgaacatgtcataaattgttttcataagttctgtcaaac 41442425  T
Q  234 agtctcaca 242  Q
    |||||||||    
T  41442424 agtctcaca 41442416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 8629499 - 8629564
Alignment:
Q  178 aagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||| |||| | |||  |||||||||    
T  8629499 aagttgaaaacaacttatgatcatgtcataagttgttttcataagttctctcaaacggtctcacaa 8629564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 11185221 - 11185301
Alignment:
Q  135 tataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    |||||||||||||| |||| |||  |||| | || |||||| ||||||||||||||||| ||||||| | ||||| |||||    
T  11185221 tataagttgttttcgttagctatcatggagagctgatggaaataagttgaaaacaacttatgaacatgttataagatgttt 11185301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 779089 - 779038
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttt 228  Q
    |||| |||||||||||| ||||||| ||||||||||||||| ||| ||||||    
T  779089 taagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttcttt 779038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 2482817 - 2482972
Alignment:
Q  87 tatttctattacacacgataaaattgagtcgaattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagttgaa 185  Q
    ||||||||||| ||| ||||||||  |||| || ||| |||||||| |||||||| ||||||| |  | ||| ||||| ||||||| ||| |||| ||||    
T  2482817 tatttctatta-acaagataaaataaagtcaaaatgtttttgtataagctataagctgttttcat--gctatcttggataacttatagaaataagctgaa 2482913  T
Q  186 aacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||| ||| ||||| |||| | |||||||||| ||| ||||   ||| |||||||||||    
T  2482914 aacagcttatgaacttatcgtgagttgttttcttaagttctcccaaacagtctcacaag 2482972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 4390261 - 4390304
Alignment:
Q  183 gaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||||| |||||||  |||||||||||||||||||||||    
T  4390261 gaaaacaacttatgaacatgccataagttgttttcataaattct 4390304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Complemental strand, 7918513 - 7918430
Alignment:
Q  138 aagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||||||| | || ||| ||||| | ||||| ||| ||||||| ||||| ||| ||||||| || ||||||||||||||||    
T  7918513 aagttgttttcgtaagctatcttggagagcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataa 7918430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 41606941 - 41606891
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttc 217  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||| |||||||    
T  41606941 cttatggaaataagctgaaaacaacttttgaacatgtcataagctgttttc 41606891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 2595071 - 2594986
Alignment:
Q  131 tagctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgtttt 216  Q
    |||| ||||||||||||| | || |  ||| || ||||||||  | |||| |||||||||||| ||||||| ||||||||||||||    
T  2595071 tagccataagttgttttcataagctgcattagacaacttatgagaataagctgaaaacaacttatgaacatgtcataagttgtttt 2594986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 30191178 - 30191125
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||| |||| ||||||||| || ||||||| ||||||||||||| |||||    
T  30191178 ttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataa 30191125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 1112260 - 1112320
Alignment:
Q  160 tggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcata 220  Q
    |||| ||||||||||| |||||||||||||| || ||| ||  ||||||||||||| ||||    
T  1112260 tggagaacttatggaaataagttgaaaacaagttatgagcaggtcataagttgtttccata 1112320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 9835940 - 9835884
Alignment:
Q  165 aacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||||||| |||| |||||||| ||| ||||||| ||||||| ||||| |||||    
T  9835940 aacttatggaaataagatgaaaacagcttatgaacatgtcataagctgtttacataa 9835884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 30918145 - 30918220
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    ||||||||| |||| |||||||||||| |||| || ||| |||||||||||||||  ||| | ||| ||||||||||    
T  30918145 cttatggaaataagctgaaaacaacttatgaa-atgtcacaagttgttttcataagctctctcaaacagtctcacaa 30918220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 26202026 - 26202120
Alignment:
Q  133 gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 226  Q
    |||||||||||||||  | |||||||||||| |||||||| || ||||||||||| | ||| |||| | | |||||||||||| |||||||||||    
T  26202026 gctataagttgtttttataagatatattggagaacttatgaaaataagttgaaaaaagcttatgaaaattgtcataagttgttctcataaattct 26202120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 8187490 - 8187414
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||||| |||  ||||||||||||| ||| || ||||||||||| ||||||| |||||| ||| |||||||||||    
T  8187490 ttatggaaataacctgaaaacaacttgcgaaaatttcataagttgtattcataagttctttcaaacagtctcacaag 8187414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 24347739 - 24347831
Alignment:
Q  152 agatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||||||||| |||||||| || |||| |||| |   ||| ||||| |||||||||||| |||||||| |||| | |||||||||||||||    
T  24347739 agatatattggagaacttatgaaaataagctgaatatggcttatgaacctatcataagttgctttcataagttctctgaaatagtctcacaag 24347831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 28039378 - 28039312
Alignment:
Q  159 ttggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattc 225  Q
    |||||||| |||||||| |||| |||||||| ||| ||||||  |||||| ||||||||||||||||    
T  28039378 ttggaaaagttatggaaataagctgaaaacagcttatgaacaagtcataacttgttttcataaattc 28039312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 29316846 - 29316764
Alignment:
Q  134 ctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgtttt 216  Q
    ||||||| ||||||| | || ||| ||||| ||||||||||| |||| |||||| ||||| ||||||| ||||||| ||||||    
T  29316846 ctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatgtcataagctgtttt 29316764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 40158719 - 40158804
Alignment:
Q  136 ataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||||||||| | || |||  |||| | |||||| ||||||| |||||||||||| | ||||| ||||||| |||||||||||    
T  40158719 ataagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataa 40158804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 42817414 - 42817337
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    ||||||||| |||| | ||||||||||  ||||||  | ||||||||||||||||| |||  ||||||||||||||||    
T  42817414 cttatggaagtaagctaaaaacaacttaagaacatgccgtaagttgttttcataaactctactaaatagtctcacaag 42817337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 43279615 - 43279507
Alignment:
Q  118 aattgtctttgtatagctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgtttt 216  Q
    |||||| ||||||| |||||||||||||||  | || ||||||||| ||||| || || ||||||||||| | ||| |||| | | ||||||| ||||||    
T  43279615 aattgtttttgtat-gctataagttgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgtttt 43279517  T
Q  217 cataaattct 226  Q
    ||||||||||    
T  43279516 cataaattct 43279507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 10285890 - 10285946
Alignment:
Q  165 aacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||||||| ||||||||||||| ||| || |||| ||||||||| |||||||||    
T  10285890 aacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataa 10285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 14666580 - 14666664
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    |||||| || |||| |||||||||| | ||||||| ||||||||||||| |||| |||||| | ||  |||||||||| ||||||    
T  14666580 cttatgaaaataaggtgaaaacaacctatgaacatgtcataagttgtttccatatattcttctgaaacgtctcacaagtgtttat 14666664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 33931698 - 33931558
Alignment:
Q  78 tgaacaagctatttctattacacacgataaaattgagtcgaattgtctttgtat-agctataagttgttttccttagatatattggaaaacttatggaat 176  Q
    |||| ||||||||||||||||||  ||||||||   |||  ||||| ||||||| ||||||||| ||||||| | || ||| ||||| || |  |||||     
T  33931698 tgaataagctatttctattacactagataaaataaggtcagattgtttttgtataagctataagctgttttcataagctattttggagaaatagtggaaa 33931599  T
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttc 217  Q
    |||| |||||  ||||| ||||||| |||||||||| ||||    
T  33931598 taagctgaaataaacttatgaacatgtcataagttgatttc 33931558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 41817200 - 41817259
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||| |||| ||||||||| || | ||||| ||||||| ||||||||||||||||    
T  41817200 cttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataaattct 41817259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 1647268 - 1647334
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaat 233  Q
    ||||||||| |||| |||||||| ||| ||| ||| ||||||| ||||||||||| ||||| |||||    
T  1647268 cttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttcttctaaat 1647334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 20952353 - 20952407
Alignment:
Q  133 gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaa 187  Q
    |||||||||||||||  |||| ||||||||| |||||||| || |||||||||||    
T  20952353 gctataagttgtttttattagctatattggagaacttatgaaaataagttgaaaa 20952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 29628830 - 29628748
Alignment:
Q  119 attgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca 200  Q
    ||||| |||||||| ||||||||||||| || | || ||| |||||||| |||||||| |||| ||||||||| || ||||||    
T  29628830 attgtttttgtataagctataagttgttctcataagctatcttggaaaatttatggaaataagctgaaaacaatttatgaaca 29628748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Complemental strand, 41241220 - 41241150
Alignment:
Q  118 aattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaa 187  Q
    |||||| |||||||| ||||||||| |||||||| || ||| ||||||||||| || ||||||| ||||||    
T  41241220 aattgtttttgtatatgctataagtagttttcctaagttatcttggaaaacttgtgaaattaagctgaaaa 41241150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 5902572 - 5902503
Alignment:
Q  182 tgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    ||||||||  || ||||||| ||||||| ||||||||||| |||||  ||| ||||||||||| ||||||    
T  5902572 tgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttat 5902503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 12140574 - 12140623
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||| ||||||||| || || ||||||||||||||||||| ||||    
T  12140574 taagttgaagacaacttgtaaaaatgtcataagttgttttcataagttct 12140623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 40279408 - 40279461
Alignment:
Q  136 ataagttgttttccttagatatattggaaaacttatggaattaagttgaaaaca 189  Q
    ||||||||||||| | || ||||||||| |||||||| || |||||||||||||    
T  40279408 ataagttgttttcataagctatattggagaacttatgaaaataagttgaaaaca 40279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 41809288 - 41809235
Alignment:
Q  162 gaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    |||| ||||||||| |||| | |||||||||| ||||||| |||||||||||||    
T  41809288 gaaagcttatggaaataagctaaaaacaacttatgaacatgtcataagttgttt 41809235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 43530147 - 43530090
Alignment:
Q  169 tatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||| ||||||||||| | ||||||||||| ||||||  ||||||||||| ||||    
T  43530147 tatggaaataagttgaaaatagcttgtgaacatgtcataatctgttttcataagttct 43530090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 44606133 - 44606088
Alignment:
Q  182 tgaaaacaacttgtgaacatatcataagttgttttcataaattctt 227  Q
    |||||||||||| || |||| ||||||||||||||||||| |||||    
T  44606133 tgaaaacaacttatggacatgtcataagttgttttcataagttctt 44606088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 1939395 - 1939323
Alignment:
Q  142 tgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgtt 214  Q
    ||||||| | || |||| |||| | ||||||||| ||||||||||||| ||| || |||| ||||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 7283028 - 7283076
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    ||||||||  |||| |||||||||||| || ||||||||||||||||||    
T  7283028 cttatggatataagatgaaaacaacttatggacatatcataagttgttt 7283076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 8017441 - 8017525
Alignment:
Q  142 tgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||| | || ||| ||||| |||||||| || || |  |||||||| || ||||||||||||||| ||||||||||| ||||    
T  8017441 tgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttcataagttct 8017525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 16867736 - 16867812
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataa 208  Q
    ||||||||| |||||||   || ||| ||||| | ||||||||| ||||||||||||||||| |||| || ||||||    
T  16867736 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 16867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 34652074 - 34652026
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    ||||||||| ||||||||||||| ||| || |||| |||||||||||||    
T  34652074 cttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 34652026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 40481903 - 40481951
Alignment:
Q  204 cataagttgttttcataaattcttttaaatagtctcacaagcgtttata 252  Q
    |||||| ||||| |||||| ||||| ||||||||||||||| |||||||    
T  40481903 cataagctgtttccataaactctttgaaatagtctcacaagtgtttata 40481951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 40512577 - 40512625
Alignment:
Q  204 cataagttgttttcataaattcttttaaatagtctcacaagcgtttata 252  Q
    |||||| ||||| |||||| ||||| ||||||||||||||| |||||||    
T  40512577 cataagctgtttccataaactctttgaaatagtctcacaagtgtttata 40512625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 41042059 - 41041983
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||||| ||||||||||||| ||  || |||| | |||||||||||  ||||||||| | ||| |||||||||||    
T  41042059 ttatggaaataagttgaaaacagctgatggacatgtaataagttgtttctataaattctctgaaacagtctcacaag 41041983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 20936266 - 20936213
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||| |||| |||||||| ||| |||||||||||||||||||||||||||    
T  20936266 ttatggaaataaggtgaaaacagcttatgaacatatcataagttgttttcataa 20936213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 1137744 - 1137827
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgttta 250  Q
    ||||||||| |||  |||||||||||| ||||||| ||||||| ||||||||||| ||||  |||| ||| ||||||| |||||    
T  1137744 cttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagtgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 2996515 - 2996659
Alignment:
Q  78 tgaacaagctatttctattacacacgataaaattgagtcgaattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaat 176  Q
    |||| |||||| ||| || ||| | ||||||||  |||| |||||| ||| |||| | |||||||||||||| | || ||| ||||| | | |||| ||     
T  2996515 tgaataagctacttcgataacataagataaaatacagtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaa 2996614  T
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||||||| | ||| || |||| |||||||||||||||||||    
T  2996615 taagttgaaaaaagcttatggacatgtcataagttgttttcataa 2996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 17884015 - 17884135
Alignment:
Q  83 aagctatttctattacacacgataaaattgagtcgaattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagt 181  Q
    ||||||||||||| ||| | ||||||||  |||  |||||| |||||||| | ||| |||||||||| | || ||||||||| | |||||| || | ||     
T  17884015 aagctatttctataacaaaagataaaataaagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagcttatgaaaattagc 17884114  T
Q  182 tgaaaacaacttgtgaacata 202  Q
    |||||||||||| ||||||||    
T  17884115 tgaaaacaacttatgaacata 17884135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 49202642 - 49202710
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca 200  Q
    ||||||||||||||||| | || ||| ||||| |||| ||| || ||||||||||||||||| ||||||    
T  49202642 agctataagttgttttcgtaagctatcttggataactaatgaaaataagttgaaaacaacttatgaaca 49202710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 53673721 - 53673621
Alignment:
Q  142 tgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcac 241  Q
    ||||||| | || ||| ||||| | |||||| || |||| |||||||||||| || |||||| ||| ||||||| |||||| || ||||||||| |||||    
T  53673721 tgttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgttgtttccataaactcgtttaaatagcctcac 53673622  T
Q  242 a 242  Q
    |    
T  53673621 a 53673621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 1965968 - 1966027
Alignment:
Q  162 gaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||| ||| ||||| |||||| |||||| ||| ||||||| |||||||||||||||||||    
T  1965968 gaaatcttctggaaataagttaaaaacagcttatgaacatgtcataagttgttttcataa 1966027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 28300337 - 28300278
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    |||||| || |||||||||||||||||  |||||| ||||| | ||||||||||||||||    
T  28300337 cttatgaaaataagttgaaaacaacttaagaacatgtcataggctgttttcataaattct 28300278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 37863986 - 37863923
Alignment:
Q  173 gaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagt 236  Q
    |||||||| |||||||||||| ||||| | ||||||| ||||||||||| |||| | |||||||    
T  37863986 gaattaaggtgaaaacaacttatgaacgtgtcataagctgttttcataagttctctcaaatagt 37863923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 23459625 - 23459719
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||| ||||||| | ||| || ||| |||||||||| |  ||||||||||| ||||| | ||||| ||||||| | ||||||||| ||||    
T  23459625 agctataagctgttttcataagagatcttgaaaaacttatgaatataagttgaaaataacttattaacatgtcataagcttttttcataagttct 23459719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 46110235 - 46110289
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||| ||| |||| |||||||||||| |||  ||||||||||||||||||||||    
T  46110235 cttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataa 46110289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 22662283 - 22662226
Alignment:
Q  169 tatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||| |||| |||||| | ||| ||||||||||||||||| ||||||||| ||||    
T  22662283 tatggaaataagctgaaaatagcttatgaacatatcataagtttttttcataagttct 22662226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 27123390 - 27123313
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    ||||||||| |||||||||||||||||    |||| ||||||||||||| |||||  ||| | ||| |||||||||||    
T  27123390 cttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaag 27123313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 45214428 - 45214485
Alignment:
Q  192 ttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgttt 249  Q
    |||||||| | |||||||||| |||||||| |||| | |||||||| |||||||||||    
T  45214428 ttgtgaacgtgtcataagttgatttcataagttctctcaaatagtcgcacaagcgttt 45214485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 6466083 - 6466035
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgtttt 216  Q
    |||||||| ||||||||||| | ||| ||||||| ||||||||||||||    
T  6466083 ttatggaaataagttgaaaatagcttatgaacatctcataagttgtttt 6466035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 23819121 - 23819197
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    ||||| ||| |||| |||||||||||| || |||| ||||||| ||||||| |||| ||||  ||| ||||||||||    
T  23819121 cttatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaacagtctcacaa 23819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 29263406 - 29263450
Alignment:
Q  171 tggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    ||||| |||| |||||||||||| ||||||||||||||| |||||    
T  29263406 tggaaataagctgaaaacaacttatgaacatatcataagctgttt 29263450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 42641660 - 42641600
Alignment:
Q  184 aaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||| ||||||||||| ||||||| ||||||||||| |||||  ||| ||| |||||||    
T  42641660 aaaacagcttgtgaacatgtcataaggtgttttcataagttcttgaaaacagtatcacaag 42641600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 6262039 - 6262134
Alignment:
Q  154 atatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgttt 249  Q
    |||| ||||| | ||| ||||| ||||||||||| | ||| ||||||| |||||||||||| ||||||  |||| |||| ||||||||||| ||||    
T  6262039 atattttggagagcttgtggaaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctcttgtaaacagtctcacaagtgttt 6262134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 3234103 - 3233993
Alignment:
Q  118 aattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgttt 215  Q
    |||||| |||||||| |||||||||||||||  | || ||||||||| |||||||| || ||||| ||||| ||||| |||| | | | |||||||||||    
T  3234103 aattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttatgaaaactgttataagttgttt 3234004  T
Q  216 tcataaattct 226  Q
    |||||| ||||    
T  3234003 tcataagttct 3233993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 7119965 - 7119899
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    |||| ||||| || ||| |||| ||||||||||||||||||||||||||||  ||| ||||||||||    
T  7119965 taagctgaaagcagcttatgaagatatcataagttgttttcataaattcttgcaaacagtctcacaa 7119899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 7218147 - 7218061
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttca 218  Q
    ||||||||||||||||| | |  |||  |||| |||||||| || ||||||||||||| ||||||||| | |||||||| |||||||    
T  7218147 agctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtgaacgtgtcataagtcgttttca 7218061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 14443472 - 14443557
Alignment:
Q  158 attggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    |||||| || ||||| || |||| ||||||||||||  |||||| | | ||| |||||||||||||||||| | ||||||||||||    
T  14443472 attggagaatttatgaaaataaggtgaaaacaacttacgaacatgttaaaagctgttttcataaattctttcatatagtctcacaa 14443557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 17420230 - 17420319
Alignment:
Q  162 gaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    ||||||| |||||| |||||||||||||| || || |||| | |||||||||||||||||  ||||  ||| ||||| ||||| ||||||    
T  17420230 gaaaactaatggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttat 17420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 35925723 - 35925776
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||| ||||||||||||| ||| ||||||| ||||||| |||||||||||    
T  35925723 ttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 15942794 - 15942726
Alignment:
Q  159 ttggaaaacttatggaattaagttgaaaacaa-cttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||| ||||||| ||| |||| ||||||||  ||| ||||||| ||||||||||||||||||||||||    
T  15942794 ttggagaacttattgaaataagctgaaaacatgcttatgaacatgtcataagttgttttcataaattct 15942726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 31118073 - 31118129
Alignment:
Q  165 aacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||||||| |||| |||||||||||  ||||||| ||||||| |||||||||||    
T  31118073 aacttatggaaataagctgaaaacaactgatgaacatgtcataagatgttttcataa 31118129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 29007789 - 29007706
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttt 215  Q
    ||||||||||||||||| |  | ||  ||| ||| ||||| ||| |||| |||||||||||| |||||||||||||| ||||||    
T  29007789 agctataagttgttttcatcggctactttgaaaagcttatcgaaataagctgaaaacaacttatgaacatatcataaattgttt 29007706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 34290233 - 34290344
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 231  Q
    ||||||||| ||||||| | || ||| ||| | |||||||| || |||| |||||||||||| |||| || ||||||| | |||| |||||||||   ||    
T  34290233 agctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtcataagcttttttaataaattctcccaa 34290332  T
Q  232 atagtctcacaa 243  Q
    ||||| ||||||    
T  34290333 atagtttcacaa 34290344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 35669000 - 35669063
Alignment:
Q  163 aaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    |||| |||||||| |||||||||||||| || || |||||||||||| || |||||||| ||||    
T  35669000 aaaatttatggaaataagttgaaaacaatttatggacatatcataagctgctttcataagttct 35669063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 41184699 - 41184613
Alignment:
Q  156 atattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattcttttaaatagtctcac 241  Q
    ||||||||||||||||| || ||||||||||| ||||| |||| | | ||||||| | ||||||||| ||||  |||| ||||||||    
T  41184699 atattggaaaacttatgaaaataagttgaaaaaaacttatgaaaattgtcataagctattttcataagttctagtaaacagtctcac 41184613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 4868432 - 4868508
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||| || ||||||||||||||||| |  |||| |||||||||| ||||||||| ||| | ||| |||||||||||    
T  4868432 cttatgtaaataagttgaaaacaacttattgacatgtcataagttg-tttcataaactctctcaaacagtctcacaag 4868508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 213
Target Start/End: Original strand, 10809342 - 10809423
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgt 213  Q
    |||||||||||||| || | || ||||||||| |||||||| || |||| ||||||||  || | ||||| |||||||||||    
T  10809342 agctataagttgttctcatcagctatattggagaacttatgaaaataagctgaaaacatattataaacatgtcataagttgt 10809423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 29635389 - 29635438
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    |||| |||||||||||| | ||||| |||||| |||||||||||||||||    
T  29635389 taagctgaaaacaacttataaacatgtcataacttgttttcataaattct 29635438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 38503535 - 38503470
Alignment:
Q  135 tataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca 200  Q
    |||||||||||||  |||| ||| ||||| |||||||| || |||| |||||||||||| ||||||    
T  38503535 tataagttgtttttgttagctatcttggagaacttatgaaaataagctgaaaacaacttatgaaca 38503470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 19389951 - 19389987
Alignment:
Q  184 aaaacaacttgtgaacatatcataagttgttttcata 220  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  19389951 aaaacaacttatgaacatatcataagtttttttcata 19389987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 24915139 - 24915031
Alignment:
Q  118 aattgtctttgtata-gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgttt 215  Q
    |||||| |||||||| |||||||| ||||||| | || | | ||||| ||||| || || ||||||||||| | ||| |||| | | |||||||||||||    
T  24915139 aattgtttttgtatatgctataagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttatgaaaaatgtcataagttgttt 24915040  T
Q  216 tcataaatt 224  Q
    |||||||||    
T  24915039 tcataaatt 24915031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 26779996 - 26779905
Alignment:
Q  134 ctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||||||||| | || ||| ||| | |||||||| || ||||||||||||||||| || ||   ||||||| |||||||| |||||||    
T  26779996 ctataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaacttatgtac-ggtcataaggtgttttcagaaattct 26779905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 33108660 - 33108600
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattctt 227  Q
    ||||||||| ||||||||||||||||| ||  |||  ||| |||||||||||||| |||||    
T  33108660 cttatggaaataagttgaaaacaacttatggtcatggcatgagttgttttcataagttctt 33108600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 37811887 - 37811943
Alignment:
Q  170 atggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    |||||| |||||||||||||  || ||||||| ||||||| ||||||||||| ||||    
T  37811887 atggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttct 37811943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 42336657 - 42336701
Alignment:
Q  177 taagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||| ||||||||||| || |||| |||||||||||||||||||    
T  42336657 taagtcgaaaacaacttttggacatgtcataagttgttttcataa 42336701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 51929589 - 51929517
Alignment:
Q  155 tatattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 226  Q
    ||||||||| ||||||||||| ||||||||||| | ||| |||| | | ||||||| ||||||||| ||||||    
T  51929589 tatattggagaacttatggaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcatgaattct 51929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 499768 - 499710
Alignment:
Q  168 ttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    |||||||| |||| |||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  499768 ttatggaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttct 499710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 244
Target Start/End: Complemental strand, 18857528 - 18857359
Alignment:
Q  78 tgaacaagctatttctattacacacgataaaattgagtcgaattgtctttgtatag-ctataagttgttttccttagatatattggaaaact--tatgga 174  Q
    |||| |||||||||| || ||||||||||||||  |||| |||||| ||| ||||  ||||||| ||||||| | || | | ||||| |  |  |||| |    
T  18857528 tgaataagctatttcaataacacacgataaaataaagtcaaattgtttttctataatctataagctgttttcataagctgtcttggagaggtgttatgaa 18857429  T
Q  175 attaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||||| |||||| ||| ||||||| |||| || ||||||||||||||||| |||  | |||||||||    
T  18857428 attaagttaaaaacagcttatgaacatgtcattagctgttttcataaattcttctaagcattctcacaag 18857359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 17368675 - 17368767
Alignment:
Q  134 ctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||||||||| | || ||| ||||| |  |||||||| |||| |||||||  | | ||||||| ||||||||||||||||||| ||||    
T  17368675 ctataagttgttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttct 17368767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 34205236 - 34205327
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaa-cttatggaattaagt-tgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    ||||||||||||||||| | || ||| ||| |||| ||||||||| ||| | |||||||||||| |||||||  |||||||||||| |||||    
T  34205236 agctataagttgttttcataagctatcttgaaaaagcttatggaaataaatgtgaaaacaacttatgaacatgacataagttgtttccataa 34205327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 37588433 - 37588322
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 231  Q
    ||||||||||||||||| | || |||  |||| | ||||||||| |||| |||||||| ||| | ||||| ||||| ||||| |||||||  ||| | ||    
T  37588433 agctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttattaacatttcataggttgtattcataagctctctcaa 37588334  T
Q  232 atagtctcacaa 243  Q
    | ||||||||||    
T  37588333 acagtctcacaa 37588322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 39983696 - 39983739
Alignment:
Q  200 atatcataagttgttttcataaattcttttaaatagtctcacaa 243  Q
    ||||||||||||||||||||||||||||| |||| || ||||||    
T  39983696 atatcataagttgttttcataaattctttcaaatggtttcacaa 39983739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 15402902 - 15402808
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattct 226  Q
    ||||||||||||||||| | |  ||| || || ||| ||| ||| | || |||||||||||| |||||||||||||| |||||||| ||| ||||    
T  15402902 agctataagttgttttcataacctattttagagaacgtatagaaattagctgaaaacaacttatgaacatatcataatttgttttcgtaagttct 15402808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 29925839 - 29925933
Alignment:
Q  133 gctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaaca-tatcataagttgttttcataaattct 226  Q
    |||||||||||||| | | || ||||||||| |||||||| || ||||||||||| |||   |||||| | ||||||| ||||||||||| ||||    
T  29925839 gctataagttgtttacataagctatattggagaacttatgaaaataagttgaaaaaaacacatgaacattgtcataagctgttttcataagttct 29925933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 4619732 - 4619793
Alignment:
Q  160 tggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||| ||||||||||| |||| ||||| || ||| ||||||| |||| ||||||||||||||    
T  4619732 tggagaacttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataa 4619793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 5531083 - 5531120
Alignment:
Q  184 aaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||||| || ||||||||||||||||||||||||    
T  5531083 aaaacaacttatggacatatcataagttgttttcataa 5531120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 6593331 - 6593408
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctcacaag 244  Q
    |||||| || |||| |||||| | ||||| |||| |||| ||| ||||||||||||||||   |||||||||||||||    
T  6593331 cttatgaaaataagctgaaaagagcttgttaacacatcaaaagctgttttcataaattctcccaaatagtctcacaag 6593408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 7907913 - 7907998
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatca-taagttgttttcataaattcttttaaatagtctcacaagcgtttat 251  Q
    |||||| ||||||| |||||||||||| |||| || ||| || ||||||||||||| |||||  ||| ||||||| ||| ||||||    
T  7907913 cttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacagtctcataagtgtttat 7907998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 15074822 - 15074765
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaaca 189  Q
    ||||||||||||||||| | || |||| |||||| ||||||||| |||| ||||||||    
T  15074822 agctataagttgttttcataagttatactggaaagcttatggaaataagctgaaaaca 15074765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 2568655 - 2568767
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaa 231  Q
    ||||||||||||||||| | || |||  |||| | || ||| || |||| | |||| ||||| |||| || ||||||| ||||||||||| ||||| |||    
T  2568655 agctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttcataagttcttctaa 2568754  T
Q  232 atagtctcacaag 244  Q
    | |||||| ||||    
T  2568755 acagtctctcaag 2568767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 8089968 - 8090040
Alignment:
Q  167 cttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataaattcttttaaatagtctc 239  Q
    |||||| || |||| |||||||| |||  ||| ||||||||||||||||||||||  ||| | ||||||||||    
T  8089968 cttatgaaaataagctgaaaacagcttaggaatatatcataagttgttttcataagctctctcaaatagtctc 8090040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 33533612 - 33533536
Alignment:
Q  132 agctataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataa 208  Q
    ||||||||| |||||||   || ||| ||||| | ||||||||| ||||||||||||||||| |||| || ||||||    
T  33533612 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 33533536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 37611279 - 37611199
Alignment:
Q  141 ttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||| | || ||| ||||| | ||||||||| |||  |||||||| ||| ||||||| ||| |||||||||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataa 37611199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 37788009 - 37787929
Alignment:
Q  141 ttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgttttcataa 221  Q
    |||||||| | || ||| ||||| | ||||||||| |||  |||||||| ||| ||||||| ||| |||||||||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataa 37787929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 16110 - 16189
Alignment:
Q  135 tataagttgttttccttagatatattggaaaacttatggaattaagttgaaaacaacttgtgaacatatcataagttgtt 214  Q
    |||||||||||||||| || | | |||||||  |||||||| ||||||||||||||||| || |||| || |||| ||||    
T  16110 tataagttgttttcctaagctgtcttggaaagattatggaaataagttgaaaacaacttatggacatgtcgtaaggtgtt 16189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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