View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3689_low_3 (Length: 344)
Name: NF3689_low_3
Description: NF3689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3689_low_3 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 25467481 - 25467146
Alignment:
| Q |
9 |
caaagggcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcatacatgcaatatagttcctatgtaaacacttcagttgat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25467481 |
caaagggcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcatacatgcaatatagtttctatgtaaacacttcagttgat |
25467382 |
T |
|
| Q |
109 |
aagaaattagcaacatacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25467381 |
aagaaattagcaacatacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatca |
25467282 |
T |
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| Q |
209 |
atttttgttagcacatccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgtg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25467281 |
atttttgttagcacatccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgtg |
25467182 |
T |
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| Q |
309 |
catttgtgcaactgaacaaacattttgcaacttccc |
344 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25467181 |
catttgtgcaactgaacaaacattttgcaacttccc |
25467146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 108 - 344
Target Start/End: Original strand, 36234567 - 36234803
Alignment:
| Q |
108 |
taagaaattagcaacatacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatc |
207 |
Q |
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||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36234567 |
taagaaattagaaagatacctcttgaagtttttgaaattcctgaagccaaccaatcccttcatatgtccttttcatcactcctgtgctctcatctttatc |
36234666 |
T |
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| Q |
208 |
aatttttgttagcacatccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgt |
307 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||| |||| |||||||| |
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| T |
36234667 |
aatttttgttaccacatccttttgcttgttttgaagatcatcccattttttgttcaacaattccagattctcttgcagcttataaacatagacagcttgt |
36234766 |
T |
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| Q |
308 |
gcatttgtgcaactgaacaaacattttgcaacttccc |
344 |
Q |
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||||| | ||| | |||||||| ||| |||||||||| |
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| T |
36234767 |
gcattagcgcacccgaacaaacttttcgcaacttccc |
36234803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 123 - 344
Target Start/End: Original strand, 36216646 - 36216867
Alignment:
| Q |
123 |
atacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatcaatttttgttagcac |
222 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| || ||||||||| ||| |||| |
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| T |
36216646 |
atacctcttgaagcttttgaaattcctgaagccaaccaattccttcattagtccttttcttcactcctgtgctctcagctctatcaatttctgtctgcac |
36216745 |
T |
|
| Q |
223 |
atccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgtgcatttgtgcaactg |
322 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || | ||||||| |||||||||||||||||||||||||||| |
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| T |
36216746 |
atccttttccttgttttgaagatcatcccatttttctttcagtgattccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaactg |
36216845 |
T |
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| Q |
323 |
aacaaacattttgcaacttccc |
344 |
Q |
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||||||| |||||||||||||| |
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| T |
36216846 |
aacaaactttttgcaacttccc |
36216867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 35901060 - 35900957
Alignment:
| Q |
10 |
aaagggcacataattgtttcataatatcatctatatccattcttttaaatttgtcat----tcatacatgcaatatagttcctatgtaaacacttcagtt |
105 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||||| |||||||||| |
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| T |
35901060 |
aaagagcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcattcatacatgcaaaacagtttctatgtaagcacttcagtt |
35900961 |
T |
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| Q |
106 |
gata |
109 |
Q |
| |
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|||| |
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| T |
35900960 |
gata |
35900957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 36234426 - 36234520
Alignment:
| Q |
11 |
aagggcacataattgtttcataatatcatctatatccattcttttaaatttgtcattcatacatgcaatatagttcctatgtaaacacttcagtt |
105 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
36234426 |
aagggcacataaatgtttcataatatcatctatatccattttttacaatttgtcattcatacatgcaatatagtttcaatgtaagcacttcagtt |
36234520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 123 - 344
Target Start/End: Original strand, 9770291 - 9770512
Alignment:
| Q |
123 |
atacctcttgaagtgtttgaaattcctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatcaatttttgttagcac |
222 |
Q |
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|||||||||||||| |||||||||| |||||||||| | |||| ||||||||||||||||||| |||||||||| || | ||||||| ||||||||| |
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| T |
9770291 |
atacctcttgaagtttttgaaattcttgaagccaactggccacttcctttgtccttttcatcactcttgtgctctcagctctttcaatttctgttagcac |
9770390 |
T |
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| Q |
223 |
atccttttccttgttttgaagatcatcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgtgcatttgtgcaactg |
322 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| || || | ||||||| ||||||||||||||||||||||||||| |
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| T |
9770391 |
gtccttttccttgttttgaagatcatcccatattttgttcagtgattccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaactc |
9770490 |
T |
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| Q |
323 |
aacaaacattttgcaacttccc |
344 |
Q |
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||||||| ||| |||||||||| |
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| T |
9770491 |
aacaaacttttcgcaacttccc |
9770512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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