View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3690_high_2 (Length: 619)
Name: NF3690_high_2
Description: NF3690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3690_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 606
Target Start/End: Complemental strand, 35908966 - 35908379
Alignment:
| Q |
18 |
aattgagagagaaaactcatgtattgtattgatgatctaaaaatgaagtttacttggatagcaagcaaatgtttgcaactaactaaattaagagtaaatt |
117 |
Q |
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| T |
35908966 |
aattgagagagaaaacgcatgtattgtattgatgatctaaaaatgaagtttacttggataacaagcaaatgtttgcaactaactaaattaagagtaaatt |
35908867 |
T |
|
| Q |
118 |
gtgatctatgaactagatgaggagtcattatgacttgctatagccgatggaaggtgtataggtgatgtatcaacattatcctctaatagaaatcgatgtt |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35908866 |
gtgatctatgaactagatgagttgtcattatgacttgctatagccgatggaaggtgtgtaggtgatgtatcaacattatcctctaatagaaatcgatgtt |
35908767 |
T |
|
| Q |
218 |
gataatgagccacacaattttatgtgaaatccatttttaaagtgtatgatcaacattgattttatctaataaaaaagtttgtgtttgagagaatgttgta |
317 |
Q |
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| T |
35908766 |
ggtaatgagccatacaattttatgtgaaatccatttttaaagtgtatgatcaacattgattttatataataaaaaagtttgtgtttgagagaatgttgta |
35908667 |
T |
|
| Q |
318 |
aaaagagtattataagactcatatttgcacaacatttatctctttgcctttctctccttgcggattgtaaatccaagaaaatggtgtgattccacctttt |
417 |
Q |
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| T |
35908666 |
aaaagagtattataagactcatatttgcacaatatttatctctttgtctttctctccttgcggattgtaaatccaagaaaatggtgtgattccacctttt |
35908567 |
T |
|
| Q |
418 |
attcttctttgtcactcattgtatctctatttttgcaaatcttctcgattttccagcaattgaaacattttataagagtaagnnnnnnnnnnnnnctttg |
517 |
Q |
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| T |
35908566 |
cttcttctttgtcactcattgtatctctatttttgcaaatcttctcgattttccagcaattgaaacattttatgagagtaag-ttttttgtttttctttg |
35908468 |
T |
|
| Q |
518 |
ttgaaaggggttagaacataattgtttacaccacataaaagggaataaaagacttcgataaaagaagataattgctcctctcccttttc |
606 |
Q |
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| T |
35908467 |
ttgaaaggggttagaacataattgtttacaccacataaaagggaataaaagacttcaataaaagaagataattgctcctctcccttttc |
35908379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 35910711 - 35910649
Alignment:
| Q |
143 |
cattatgacttgctatagccgatggaaggtgtataggtgatgtatcaacattatcctctaata |
205 |
Q |
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| T |
35910711 |
cattatgatttgctatagccggtggaaggtgtgtagaggatgtatcaactttatcctctaata |
35910649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 35910855 - 35910806
Alignment:
| Q |
18 |
aattgagagagaaaactcatgtattgtattgatgatctaaaaatgaagtt |
67 |
Q |
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| T |
35910855 |
aattgagagagaaaactcatttatggaattgatgatttaaaaatgaagtt |
35910806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 27183459 - 27183398
Alignment:
| Q |
234 |
attttatgtgaaatccatttttaaagtgtatgatcaacattgattttatctaataaaaaagt |
295 |
Q |
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| T |
27183459 |
attttatgttaattccattttcaaagtgtatgatccacattgatttaacccaataaaaaagt |
27183398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 27833001 - 27832940
Alignment:
| Q |
234 |
attttatgtgaaatccatttttaaagtgtatgatcaacattgattttatctaataaaaaagt |
295 |
Q |
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| T |
27833001 |
attttatgttaattccattttcaaagtgtatgatccacattgatttaacccaataaaaaagt |
27832940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 4394469 - 4394412
Alignment:
| Q |
236 |
tttatgtgaaatccatttttaaagtgtatgatcaacattgattttatctaataaaaaa |
293 |
Q |
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||||| |||||| ||||||||||||||| |||| ||||| ||||||| |||||||||| |
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| T |
4394469 |
tttatttgaaattcatttttaaagtgtaagatctacattaattttatttaataaaaaa |
4394412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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