View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3690_low_5 (Length: 400)
Name: NF3690_low_5
Description: NF3690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3690_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 35172579 - 35172210
Alignment:
| Q |
20 |
gacaaacattatttgtacatccgctcaatacactttgttaatcatgttaaaaaatatggttgaataactagagtagacggttaattcaattcacaactaa |
119 |
Q |
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| T |
35172579 |
gacagacattatttgtacatccactcaatacaccttgttaatcatgttaaaaaatgttgttgaataactagagtagacggttaattcaattcacaactaa |
35172480 |
T |
|
| Q |
120 |
aattatggttaactaagctacatgaaatttaacgacaattttcaacgtaaattgaattaaatatctatccaactgaattaactatatttttgtatatgat |
219 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35172479 |
aattatagttaactaagctatatgaaatttaacgacaattttcaacgtaaattgaattaaatatctatccaactcaattaactatatttttgtatatgat |
35172380 |
T |
|
| Q |
220 |
taaccatgtgtcgcgggtgtatataaaaggggtgtccatgaaacatatttctatataaaccactaagctgcttgtatttcaaagccaaaccaatcattct |
319 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172379 |
taaccatgtgtcgcgtgtgtatgtaaaaggggtgtccatgaaacatatttctatataaaccactaagctgcttgtatttcaaagccaaaccaatcattct |
35172280 |
T |
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| Q |
320 |
tgtttagctgcataatggagcctaactttaatgtttcgcttccattagtgttcctaattatcactccttt |
389 |
Q |
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| T |
35172279 |
tgtttagctgcataatggagcctaactttaatgtttcgcttccattagtgttcctaattatcactccttt |
35172210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 10257520 - 10257596
Alignment:
| Q |
156 |
aattttcaacgtaaattgaattaaatatctatccaactgaattaactatatttttgtatatgattaaccatgtgtcg |
232 |
Q |
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| T |
10257520 |
aattttcaacgtgagttgaattaattatctatccaattgaattaaccacatttttatacgtgattaaccaggtgtcg |
10257596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 10181150 - 10181226
Alignment:
| Q |
156 |
aattttcaacgtaaattgaattaaatatctatccaactgaattaactatatttttgtatatgattaaccatgtgtcg |
232 |
Q |
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| T |
10181150 |
aattttcaacgtgacttgaattaattatctattcaattgaattaaccacatttttatacatgattaactaggtgtcg |
10181226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 265
Target Start/End: Original strand, 25651301 - 25651474
Alignment:
| Q |
91 |
agtagacggttaattcaattcacaactaaaattatggttaactaagctacatgaaatttaacgacaattttcaacgtaaattgaattaaatatctatcca |
190 |
Q |
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|||||| ||||||||||||||||| |||||| ||||||| | | || |||||| |||||||||||||| ||||| |||||||||| || | | |
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| T |
25651301 |
agtagatggttaattcaattcacagtcaaaattctggttaatttaactgcatgaa--ttaacgacaatttttaacgtggattgaattaaccatattctta |
25651398 |
T |
|
| Q |
191 |
actgaattaactatatttttgtatatgattaaccatgtgtcgcgggtgtat-ataaaaggggtgtccatgaaacat |
265 |
Q |
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| T |
25651399 |
attgaattaacaatatttttgcacctgattaatcaagtggcgcaggtgtatgaaaaaataggtgtccatgaaacat |
25651474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 10029797 - 10029873
Alignment:
| Q |
156 |
aattttcaacgtaaattgaattaaatatctatccaactgaattaactatatttttgtatatgattaaccatgtgtcg |
232 |
Q |
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|||||||||||| | ||||||||| ||||||| ||| | ||||||| | ||||||||| |||| |||| | |||||| |
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| T |
10029797 |
aattttcaacgtgagttgaattaattatctattcaattcaattaaccacatttttgtacatgactaactaggtgtcg |
10029873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 10124718 - 10124794
Alignment:
| Q |
156 |
aattttcaacgtaaattgaattaaatatctatccaactgaattaactatatttttgtatatgattaaccatgtgtcg |
232 |
Q |
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|||||||||||| | ||||||||| ||||||| ||| ||||||||| | |||||| || |||| |||| | |||||| |
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| T |
10124718 |
aattttcaacgtgagttgaattaattatctattcaattgaattaaccacatttttatacatgactaactaggtgtcg |
10124794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 8283894 - 8283850
Alignment:
| Q |
166 |
gtaaattgaattaaatatctatccaactgaattaactatattttt |
210 |
Q |
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| T |
8283894 |
gtaaattgaattaatcatctattcaactgaattaaccatattttt |
8283850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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