View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3691_high_3 (Length: 429)
Name: NF3691_high_3
Description: NF3691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3691_high_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 31281565 - 31281973
Alignment:
| Q |
17 |
tatgtgaaatcaaaatcatactcaaaatcaaaatcaactgcagaataagaaacatacatgcttatacatatgcatctacaaacacatactcaaaatcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31281565 |
tatgtgaaatcaaaatcatactcaaaatcaaaatcaactgcagaataagaaacatacatgtttatacatatgcatctacaaacacatactcaaaatcaaa |
31281664 |
T |
|
| Q |
117 |
atccaactaaatgctaatgtgaaatcaaaattttaatgaaaacttctatgaatcagaattgttcagctattctgcaaatgaaagaaaatgacatagc-at |
215 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||| | |
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|
| T |
31281665 |
atccaactaaatgcttatgtgaaattagaattttaatgaaaacttttatgaatcagaattgtttagctttgctgcaaatgaaagaaaatgacatagccag |
31281764 |
T |
|
| Q |
216 |
ccttagatttctgtttccctttcttttacctgaacaacaatcaatacaaactgaattccagaacaacattattaacacaacatcactaagtgaatttcag |
315 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31281765 |
ccttggatttctgtttccctttcttttacctgaacaacaatcaatacaaactgaatttcagaacaacattattaacacaacatcactaagtgaatttcag |
31281864 |
T |
|
| Q |
316 |
aatgaagggaataatgaattccaacaacacaaattcgaaattcgaatttgagttcgaatttctaggctctaaaatcgagttattgttgttgttgttattt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31281865 |
aatgaagggaataatgaattccaacaacacaaattcgaaattcgaatttgaattcgaattcctaggctctaaaatcgagttattgttgttgttgttattt |
31281964 |
T |
|
| Q |
416 |
ctgtgctcc |
424 |
Q |
| |
|
||| ||||| |
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|
| T |
31281965 |
ctgggctcc |
31281973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 38 - 408
Target Start/End: Complemental strand, 55425129 - 55424758
Alignment:
| Q |
38 |
tcaaaatcaaaatcaactgcagaataagaaacatacatgcttatacatatgcatctacaaacacatactcaaaatcaaaatccaactaaatgctaatgtg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
55425129 |
tcaaaatcaaaatcaactgcagaataagaaacatacatatttatacatatgcatctacaaacacatgctcaaaatcaaaatccaactaaatgcttatgtg |
55425030 |
T |
|
| Q |
138 |
aaatcaaaattttaatgaaaacttctatgaatcagaattgttcagctattctgcaaatgaaagaaaatgacatagc-atccttagatttctgtttccctt |
236 |
Q |
| |
|
|||| | ||||||||||||||||| ||||||||| ||||||| |||| | || ||||||||||||||||||||||| | |||| |||||||||||||||| |
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|
| T |
55425029 |
aaattagaattttaatgaaaacttttatgaatcaaaattgtttagctttgctacaaatgaaagaaaatgacatagccagccttggatttctgtttccctt |
55424930 |
T |
|
| Q |
237 |
tcttttacctgaacaacaatcaatacaaactgaattccagaacaacattattaacacaacatcactaagtgaatttcagaatgaagggaataatgaattc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55424929 |
tcttttacctgaacaacaatcaatacaaactgaatttcaaaacaacattattaacacaacatcactaagtgaatttcagaatgaagggaataatgaattc |
55424830 |
T |
|
| Q |
337 |
caacaacacaaattcgaaattcgaatttgagttcgaatttctaggctctaaaatcgagttattgttgttgtt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55424829 |
caacaacacaaattcgaaattcgaatttgaattcgaatttctaggctctaaaatcgagttattgttgttgtt |
55424758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Original strand, 28656145 - 28656552
Alignment:
| Q |
17 |
tatgtgaaatcaaaatcatactcaaaatcaaaatcaactgcagaataagaaacatacatgcttatacatatgcatctacaaacacatactcaaaatcaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28656145 |
tatgtgaaatcaaaatcatactcaaaatcaaaatcaactgcagaataagaaacatacatgtttatacatatgcatctacaaacacatactcaaaatcata |
28656244 |
T |
|
| Q |
117 |
atccaactaaatgctaatgtgaaatcaaaattttaatgaaaacttctatgaatcagaattgttcagctattctgcaaatgaaagaaaatgacatagc-at |
215 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||| | |
|
|
| T |
28656245 |
atccaactaaatgcttatgtgaaatcagaattttaatgaaaacttttatgaatcagaattgtttagctttgctgcaaatgaaagaaaatgacatagccag |
28656344 |
T |
|
| Q |
216 |
ccttagatttctgtttccctttcttttacctgaacaacaatcaatacaaactgaattccagaacaacattattaacacaacatcactaagtgaatttcag |
315 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28656345 |
ccttggatttttgtttccctttcttttacctgaacaacaatcaatacaaactgaattccagaacaacattattaacacaacatcactaagtgaatttcag |
28656444 |
T |
|
| Q |
316 |
aatgaagggaataatgaattccaacaacacaaattcgaaattcgaatttgagttcgaatttctaggctctaaaatcgagttattgttgttgttgttattt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28656445 |
aatgaagggaataatgaattccaacaacacaaatttgaaattcgaatttgaatttgaatttctaggctctaaaatcaagttattgttgttgttgttattt |
28656544 |
T |
|
| Q |
416 |
ctgtgctc |
423 |
Q |
| |
|
||| |||| |
|
|
| T |
28656545 |
ctgggctc |
28656552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 338
Target Start/End: Original strand, 11243323 - 11243452
Alignment:
| Q |
215 |
tccttagatttctgtttccctttcttttacctgaacaacaatcaatacaaactgaattccagaacaacattattaac------acaacatcactaagtga |
308 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
11243323 |
tccttcgatttccctttccctttcttttacctgaaatacaatcaatacaaagtgatttctagaacaacattattaacacaacaacaacaacacaaagtga |
11243422 |
T |
|
| Q |
309 |
atttcagaatgaagggaataatgaattcca |
338 |
Q |
| |
|
||| || ||||||||||||| ||||||||| |
|
|
| T |
11243423 |
attccataatgaagggaatagtgaattcca |
11243452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 48923870 - 48923912
Alignment:
| Q |
71 |
tacatgcttatacatatgcatctacaaacacatactcaaaatc |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48923870 |
tacatgtttatacatatgcatctacaaacacatactcaaaatc |
48923912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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