View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3691_high_6 (Length: 325)
Name: NF3691_high_6
Description: NF3691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3691_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 309
Target Start/End: Complemental strand, 37784413 - 37784137
Alignment:
| Q |
33 |
gaattgtaaacccttgaatatctttatctgaaacatatctcggatatgctataaataacccttaaatatttgaaatttcaacaattataattacaaagaa |
132 |
Q |
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| T |
37784413 |
gaattgtaaacccttgaatatctttatctgaaacatatctcggatatgctataaataacccttaaatatttgaaatttcaacacttataattacaaagaa |
37784314 |
T |
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| Q |
133 |
acattattatgttgaaattcatatcaaagtgtttcaacttgtaaagtttgtttgtgatagtattttcattcagttgtttaagaacattgttgaatgatat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37784313 |
acattattatgttgaaattcatatcaaagtgtttcaacttgtaaagtttgtttgtgatagtattttcattcagttgtttaagaacattgttgaatgatat |
37784214 |
T |
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| Q |
233 |
acaacttgaaattcacaaatacctttcttattataatagttttattgtgttgtgccatgtgaatgcaatatccttaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
37784213 |
gcaacttgaaattcacaaatacctttcttattataatagttgtattgtgttgtgccatgtgaatgcaagatccttaa |
37784137 |
T |
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