View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3691_low_14 (Length: 241)

Name: NF3691_low_14
Description: NF3691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3691_low_14
NF3691_low_14
[»] chr1 (8 HSPs)
chr1 (20-221)||(11398263-11398464)
chr1 (114-194)||(52946197-52946277)
chr1 (114-218)||(18136418-18136520)
chr1 (114-194)||(52935154-52935234)
chr1 (114-194)||(52942789-52942869)
chr1 (114-202)||(31230343-31230431)
chr1 (114-164)||(52938565-52938615)
chr1 (140-192)||(41956079-41956130)
[»] chr7 (3 HSPs)
chr7 (109-221)||(47762052-47762163)
chr7 (140-230)||(20290660-20290749)
chr7 (114-175)||(25998371-25998432)
[»] chr2 (1 HSPs)
chr2 (114-223)||(42735264-42735374)
[»] chr5 (2 HSPs)
chr5 (109-201)||(10548171-10548263)
chr5 (132-221)||(20319525-20319612)
[»] chr4 (3 HSPs)
chr4 (114-194)||(40225492-40225572)
chr4 (132-221)||(5373879-5373966)
chr4 (132-221)||(17225237-17225324)
[»] scaffold0590 (2 HSPs)
scaffold0590 (114-194)||(5035-5117)
scaffold0590 (146-194)||(7713-7761)
[»] chr3 (3 HSPs)
chr3 (130-221)||(7051110-7051199)
chr3 (140-202)||(30174410-30174472)
chr3 (109-179)||(52098927-52099000)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 11398464 - 11398263
Alignment:
Q  20 actcccactagtattacacatttatgtggtgaggtggggggttaacgcatcatctcgcacttaagatttgacacatgaaacgtaacactctgtgatgagt 119  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  11398464 actcccactagtattacacaattatgtggtgaggtgggggtttaacgcatcatctcgcactcaagatttgacacatgaaacgtaacactctgtaatgagt 11398365  T
Q  120 cttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaaaatatgtgatgaaactc 219  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11398364 cttagagttagaagtggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggatggaaaaatatgtgatgaaactc 11398265  T
Q  220 tt 221  Q
    ||    
T  11398264 tt 11398263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 52946197 - 52946277
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52946197 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52946277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 18136418 - 18136520
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgag-aaaagccaaggaaataagaatggaaaaatatgtgat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||   |||||||||||    
T  18136418 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaaagccaaggaaataagcatg---aaatatgtgat 18136514  T
Q  213 gaaact 218  Q
    | ||||    
T  18136515 gtaact 18136520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 52935154 - 52935234
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 194  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52935154 atgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52935234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 52942789 - 52942869
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 194  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52942789 atgagtctaaaagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 52942869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 31230431 - 31230343
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaa 202  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||    
T  31230431 atgagtcttagagttagaaggggcgttatgggaaataggaatatggacccttataaatatgagaaaaaccaatggaataagcatggaaa 31230343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 52938565 - 52938615
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggaccct 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52938565 atgagtcttagagttagaaggggcattatgggaaataggaatatggaccct 52938615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 41956079 - 41956130
Alignment:
Q  140 tatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaata 192  Q
    |||||||||||| |||| ||||||||||||||| |||||||| ||||||||||    
T  41956079 tatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaata 41956130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 47762052 - 47762163
Alignment:
Q  109 ctgtgatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaaaatatg 208  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  47762052 ctgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacccttataaatatgagaaaagccaaggaaataaggattg-aaaatatg 47762150  T
Q  209 tgatgaaactctt 221  Q
    |||||||||||||    
T  47762151 tgatgaaactctt 47762163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 20290749 - 20290660
Alignment:
Q  140 tatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataaga-atggaaaaatatgtgatgaaactcttatctctctg 230  Q
    ||||| ||||| ||||||||||||||||||||| ||| ||||||||| |||||||| |||| |||||||||||||||| |||| ||| ||||    
T  20290749 tatggtaaatatgaatatggacccttataaataagag-aaagccaagcaaataagacatgg-aaaatatgtgatgaaattcttctctatctg 20290660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 25998432 - 25998371
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatga 175  Q
    ||||||| ||||||||||||  ||||||||| |||||||||||| ||||| |||||||||||    
T  25998432 atgagtcatagagttagaagatgcattatggaaaataggaatatagacccgtataaatatga 25998371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 42735264 - 42735374
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacc--cttataaatatgagaaaagccaaggaaataagaatggaaaaatatgtga 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| || |||||||||||||    
T  42735264 atgagtcttagagttagaaggggcattatgggaaataggaatatggaccctcttataaatatgagaaaaggcaaggaaataagcat-gaaaaatatgtga 42735362  T
Q  212 tgaaactcttat 223  Q
    ||||||||||||    
T  42735363 tgaaactcttat 42735374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 10548171 - 10548263
Alignment:
Q  109 ctgtgatgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaa 201  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  10548171 ctgtaatgagtcttagagttagaaggggcattatggaaaataggaatatggacctttataaatatgagaaaagccaaggaaataagtatggaa 10548263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 20319612 - 20319525
Alignment:
Q  132 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaaaatatgtgatgaaactctt 221  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||| | |||||||||| || |||| || |||||||||||||||    
T  20319612 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtccaggaaataagcat-gaaatatgtgtgatgaaactctt 20319525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 40225572 - 40225492
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataag 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40225572 atgagtcttagagttagaaggggcattatgggaaataggaatatggaccctaataaatatgagaaaagccaaggaaataag 40225492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 5373966 - 5373879
Alignment:
Q  132 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaaaatatgtgatgaaactctt 221  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||| |||||||||||| || ||||||| |||||||||||||||    
T  5373966 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagtcaaggaaataagcat-gaaaaatgtgtgatgaaactctt 5373879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 17225324 - 17225237
Alignment:
Q  132 aggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaaaatatgtgatgaaactctt 221  Q
    ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||| |||| |||| || ||||||||||||||||||    
T  17225324 aggggcaatatgggaaatagaaata-ggacccttataaataagagaaaagccaaggaagtaagcatgg-aagatatgtgatgaaactctt 17225237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 5117 - 5035
Alignment:
Q  114 atgagtcttagagttagaaggggcattatgggaaataggaatatggaccct--tataaatatgagaaaagccaaggaaataag 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  5117 atgagtcttagagttagaaggggcattatgggaaataggaatatggacccttatataaatatgagaaaagccaaggaaataag 5035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 7761 - 7713
Alignment:
Q  146 aaataggaatatggacccttataaatatgagaaaagccaaggaaataag 194  Q
    ||||||||||||| ||||||||||||| |||||||  |||| |||||||    
T  7761 aaataggaatatgaacccttataaatacgagaaaaatcaagaaaataag 7713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 7051110 - 7051199
Alignment:
Q  130 gaaggggcattatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaaaatatgtgatgaaactctt 221  Q
    ||||||| | ||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||| |||| |||||||||||||||||||||    
T  7051110 gaaggggtaatatgggaaaaaggaatatggacccttataaataagag-aaatccaaggaaataaggatgg-aaaatatgtgatgaaactctt 7051199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 30174472 - 30174410
Alignment:
Q  140 tatgggaaataggaatatggacccttataaatatgagaaaagccaaggaaataagaatggaaa 202  Q
    ||||||||  ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  30174472 tatgggaataaggaatatggatccttataaataagagaaaagccaaggaaataagcatggaaa 30174410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 52098927 - 52099000
Alignment:
Q  109 ctgtgatgagtcttagagttagaag---gggcattatgggaaataggaatatggacccttataaatatgagaaa 179  Q
    |||| ||||||||||||||||||||   || |||||| | |||||||||||| ||||||||||||||| |||||    
T  52098927 ctgtaatgagtcttagagttagaagaaaggacattatagaaaataggaatatagacccttataaatataagaaa 52099000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University