View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3691_low_2 (Length: 458)
Name: NF3691_low_2
Description: NF3691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3691_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 21 - 446
Target Start/End: Complemental strand, 34385042 - 34384617
Alignment:
| Q |
21 |
caagtaaatccacaaggaataaaagagggcattcaaaggtacgcagtactagtactataatgtgcattttcatgtaactgtacctatgtgataagcctgc |
120 |
Q |
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| T |
34385042 |
caagtaaatccacaaggaataaaagagggcattcaaaggtacgtagtactagtactataatgtgcattttcatgtaactgtacctatgtgataagcctgc |
34384943 |
T |
|
| Q |
121 |
aaatttgaaaactttgatgttgattttgttttctattaaattttacagtctctcaagtggaggttttacaccaaagtttatcatcgttgatgatggatgg |
220 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34384942 |
aaatttcaaaactttgatgttgattttgttttctattaaattttacagtctctcaagtggaggttttacaccaaagtttatcatcgttgatgatggatgg |
34384843 |
T |
|
| Q |
221 |
caagagacgcacaatgaatttttcaaagaaggtgaaccaatagttgaaggaacccagtaagtctctcatttcaattgagatcacattttttcccttccat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
34384842 |
caagagacgcacaatgaatttttcaaagaaggtgaaccaatagttgaaggaacccagtaagtctctcattacaattgagatcacattttttcccttcaat |
34384743 |
T |
|
| Q |
321 |
ttcttagtcctctgccgacatcttttactatttattaggtttgcaacaaggctaatagacattaaggaaaatgtaaagttcagaaatgcaggctccaaca |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34384742 |
ttcttagtcctctgccgacatcttttactatttattaggtttgcaacaaggctaatagacattaaggaaaatgtaaagttcagaagtgcaggctccaaca |
34384643 |
T |
|
| Q |
421 |
attcttgcaacaacctccatgatttt |
446 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
34384642 |
attcttgcaacaacctccatgatttt |
34384617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 27785474 - 27785585
Alignment:
| Q |
22 |
aagtaaatccacaaggaataaaagagggcattcaaaggtacgcagtactag---------tactataatgtgcattttcatgtaactgtacctatgtgat |
112 |
Q |
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||||||||||||||||| ||||||||||||| ||| ||||| ||||||| ||||||||||| ||||||||| |||| |||||||| ||| |
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| T |
27785474 |
aagtaaatccacaaggagtaaaagagggcatccaagggtacctagtactatactatactatactataatgtacattttcatacaactttacctatgagat |
27785573 |
T |
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| Q |
113 |
aagcctgcaaat |
124 |
Q |
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|||||||||||| |
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| T |
27785574 |
aagcctgcaaat |
27785585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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