View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3691_low_3 (Length: 432)
Name: NF3691_low_3
Description: NF3691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3691_low_3 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 20126 - 19710
Alignment:
| Q |
16 |
cactcatgaaaacagaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaagcacttt |
115 |
Q |
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| T |
20126 |
cactcatgaaaacagaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaagcacttt |
20027 |
T |
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| Q |
116 |
tgtttaacttctgttaaaacataaacaagcttactcaaatttttgttagggaagaaagaactattaacttcttttgactgagaagctttcatacactaga |
215 |
Q |
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| T |
20026 |
tgtttaacttctgttaaaacataaacaagcttactcaaatttttgttagggaagaaagaactattagcttcttttgactgagaagctttcatacactaga |
19927 |
T |
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| Q |
216 |
aggtggtttaaactgggctaaggatctacggatctattattgttcttttggtataagcacgctgaaccttaatattgaaaatgacttaatgccttctctt |
315 |
Q |
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| T |
19926 |
aggtggtttaaactgggctaaggatctacggatctattattgttcttttggtacaagcacgctgaaccttaatattgaaaatgacttaatgccttctctt |
19827 |
T |
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| Q |
316 |
cattttaactggggatatttgtgatacaactatgcatgcttgactttgtcaatagtcataaatagttgaatttgcgcgcgtcttcatttagaacaagaag |
415 |
Q |
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| T |
19826 |
cattttaactggggatatttgtgatacaactatgcatgcttgactttgtcaatagtcataaatagttgaatttgcgcgcgtcttcatttagaacaagaag |
19727 |
T |
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| Q |
416 |
attgtgctcaagatttt |
432 |
Q |
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| T |
19726 |
attgtgctcaagatttt |
19710 |
T |
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