View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3691_low_6 (Length: 376)
Name: NF3691_low_6
Description: NF3691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3691_low_6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 9533871 - 9534012
Alignment:
| Q |
235 |
ttcaatctttttccagtataggatcaaatggggcaaaagggtggatcaagattaaagagagagaaactatagcgtcatggtacaaaaactatagaagtga |
334 |
Q |
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| T |
9533871 |
ttcaatctttttccagtatagaatcaaatggggcaaaagggtggatcaagattaaagagagagaaactatagcgtcatggtacaaaaactatagaagtga |
9533970 |
T |
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| Q |
335 |
agtcaaacaatgtggcaccatcaaaaccaaaggaaaacaaca |
376 |
Q |
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| T |
9533971 |
agtcaaacaatgtggcaccatcaaaaccaaaggaaaacaaca |
9534012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 9533746 - 9533784
Alignment:
| Q |
110 |
gatgggttgttcctaaaccaaccctaaattggtgtaagg |
148 |
Q |
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| T |
9533746 |
gatgggttgttcctaaaccaaccctaaattggtgtaagg |
9533784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 9533640 - 9533675
Alignment:
| Q |
13 |
tcatcaccagacatccttaaatccttcaaaatccac |
48 |
Q |
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| T |
9533640 |
tcatcaccagacatccttaaatccttcaaaatccac |
9533675 |
T |
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