View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3691_low_9 (Length: 281)
Name: NF3691_low_9
Description: NF3691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3691_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 29495077 - 29494874
Alignment:
| Q |
3 |
agcgtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggaga |
102 |
Q |
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| T |
29495077 |
agcgtgctacggttgaaagaaaaccggcgacgagagagagcacaaatagataataatggagacacaatggatttcaatcagcgacgggtgaaaggggaga |
29494978 |
T |
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| Q |
103 |
atcgaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatgagaccaatcctctg |
202 |
Q |
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| T |
29494977 |
gtcgaagatcgacggcggcgacggtgaaatctcgc--gaggtgctagagttgggagaaaagggaaatggcatgggagagggagatgggacgaatcctctg |
29494880 |
T |
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| Q |
203 |
ctacag |
208 |
Q |
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|||||| |
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| T |
29494879 |
ctacag |
29494874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 208
Target Start/End: Complemental strand, 6608144 - 6607944
Alignment:
| Q |
6 |
gtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggagaatc |
105 |
Q |
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||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
6608144 |
gtgctacagttaaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatgggtgaaaggggagaatc |
6608045 |
T |
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| Q |
106 |
gaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatgagaccaatcctctgcta |
205 |
Q |
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| T |
6608044 |
gaatatcgacgacggcgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgagagagagagatgggcccaatcctctacta |
6607947 |
T |
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| Q |
206 |
cag |
208 |
Q |
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||| |
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| T |
6607946 |
cag |
6607944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 6625962 - 6626156
Alignment:
| Q |
6 |
gtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggagaatc |
105 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
6625962 |
gtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcgatgggtgaaaggggagaatc |
6626061 |
T |
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| Q |
106 |
gaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagagatgagaccaatcctctgcta |
205 |
Q |
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| T |
6626062 |
gaatatcga------cgacggcgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgggagagagagatgggcccaatcctctacta |
6626153 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 19843415 - 19843237
Alignment:
| Q |
6 |
gtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggagaatc |
105 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |
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| T |
19843415 |
gtgctacagttgaaagaaaaccgccgacaagagagagcacaaatagataataatggagacacaatgaatttcaatcagcggcgggtgaaaggggagaatc |
19843316 |
T |
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| Q |
106 |
gaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagaga |
186 |
Q |
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||||||| ||| || ||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19843315 |
gaagatcaacgacggtgacggtgaaatct--cgtgaggtgctagggttgggagaaaagggaaatggcatgggagagagaga |
19843237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 9793666 - 9793838
Alignment:
| Q |
6 |
gtgctacggttgaaagaaaaccggcgacgggagagagcacaaatagataataatggagacacaatggatttcaatctgcgacgggtgaaaggggagaatc |
105 |
Q |
| |
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||||||||||||||||||||||| | || ||||||||||||| | |||||||||||| | ||||||||||||| ||||| ||||||||||||| ||| |
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| T |
9793666 |
gtgctacggttgaaagaaaaccgctggcgagagagagcacaaaggaagaataatggagacgcgatggatttcaatcagcgacaggtgaaaggggaggatc |
9793765 |
T |
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| Q |
106 |
gaagatcgacggtggcgacggtgaaatctcgcgagaggtgctagggttgggagaaaagggaaatcgcatgggagagagaga |
186 |
Q |
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|| |||||| ||| ||||||||| || |||||||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
9793766 |
gatgatcga------agacagtgaaatcttgc--aaggtgctagggttgggaggaaagggaaagggcatgggggagagaga |
9793838 |
T |
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