View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3692_high_1 (Length: 743)
Name: NF3692_high_1
Description: NF3692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3692_high_1 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 686; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Complemental strand, 29651608 - 29650858
Alignment:
| Q |
1 |
cacatattggatactgaacacgccctcaatatgaagtgtcggtgctagaatacatcatatgttttaaat--------ttatttatgatgtgaatgtgaat |
92 |
Q |
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||||||||||||||||||||||| | |||||||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||||||| |
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| T |
29651608 |
cacatattggatactgaacacgcatttaatatgaagtgttggtgctagaatatattatatgttttaaatatatttatttatttatgatgtgaatgtgaat |
29651509 |
T |
|
| Q |
93 |
ctaatactctgtatactggatgcagaggaagactctgttaggagcagagaacaaacagaggatttggagaaaatagaagagaattttactgaatcaaatg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651508 |
ctaatactctgtatactggatgcagaggaagactctgttaggagcagagaacaaacagaggatttggagaaaatagaagagaattttactgaatcaaatg |
29651409 |
T |
|
| Q |
193 |
aaaatgaagaggataaatcaatggatttgaaatgggaagatggtaaattgaggacattatctggccattttcttagtggccaaggaaagaatgtgaggat |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651408 |
aaaatgaagaggataaatcaatggatttgaaatgggaagatggtaaattgaggacattatctggccattttcttagtggccaaggaaagaatgtgaggat |
29651309 |
T |
|
| Q |
293 |
aaacattcctttgacaacaccttctcaaaccttttcagaaattagttaccttgtaatggaagatttgttcaataagtcttcaagaaaatgcaatccagaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651308 |
aaacattcctttgacaacaccttctcaaaccttttcagaaattagttaccttgtaatggaagatttgttcaataagtcttcaagaaaatgcaatccagaa |
29651209 |
T |
|
| Q |
393 |
ggtggtgtgcttcgtgttaataaaacaaggttacatcatgcagaaaagatgatcaaaggtggtttcattgagctttataagggcctaggatatttgaatg |
492 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651208 |
ggtggtgtgcttcgtgttaataaaacaaggttgcatcatgcagaaaagatgatcaaaggtggtttcattgagctttataagggcctaggatatttgaatg |
29651109 |
T |
|
| Q |
493 |
attataggtataattcaaattttctttcatcacaaatataactaaatttttaagatttttgttattttgatactcacttttgaaataaaatttcgacaat |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29651108 |
attataggtataattcaaattttctttcatcacaaatataactaaatttttaagatttttgttattttgatactcacttttgaaataaaatttagacaat |
29651009 |
T |
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| Q |
593 |
aaattgatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatatagcaaggtgtcaaatagttaataagttgaaatattt |
692 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29651008 |
aaattgatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatatagcaaggtgtcaaatggttaataagttgaaatattt |
29650909 |
T |
|
| Q |
693 |
tgttatatttattaattatctaataaacgtaattaaccatatatttgaatt |
743 |
Q |
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| T |
29650908 |
tgttatatttattaattatctaataaacgtaattaaccatatatttgaatt |
29650858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 598 - 657
Target Start/End: Original strand, 5078943 - 5079002
Alignment:
| Q |
598 |
gatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatata |
657 |
Q |
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| T |
5078943 |
gatggttaatgcagttcaaatatatggttaattacatttagtagatgattagtgaatata |
5079002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 667
Target Start/End: Complemental strand, 5561047 - 5560978
Alignment:
| Q |
598 |
gatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatatagcaaggtgtc |
667 |
Q |
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| T |
5561047 |
gatgattaatgcagtttaaatatatggttaattacgttcactagatggttaatgaatataacaaggtgtc |
5560978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 691 - 743
Target Start/End: Complemental strand, 42955699 - 42955647
Alignment:
| Q |
691 |
tttgttatatttattaattatctaataaacgtaattaaccatatatttgaatt |
743 |
Q |
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|||||||||||||||||| ||||| ||||| ||||||| ||| |||||||||| |
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| T |
42955699 |
tttgttatatttattaatcatctactaaacctaattaaacatgtatttgaatt |
42955647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 743
Target Start/End: Original strand, 19809069 - 19809120
Alignment:
| Q |
692 |
ttgttatatttattaattatctaataaacgtaattaaccatatatttgaatt |
743 |
Q |
| |
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|||||||||| |||||| ||||| |||| |||||||||||| |||||||||| |
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| T |
19809069 |
ttgttatattcattaatcatctactaaatgtaattaaccatgtatttgaatt |
19809120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 738
Target Start/End: Original strand, 27368597 - 27368644
Alignment:
| Q |
691 |
tttgttatatttattaattatctaataaacgtaattaaccatatattt |
738 |
Q |
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||||||||||| |||||| ||||| || |||||||||||||||||||| |
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| T |
27368597 |
tttgttatattcattaatcatctactacacgtaattaaccatatattt |
27368644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 738
Target Start/End: Original strand, 27458944 - 27458991
Alignment:
| Q |
691 |
tttgttatatttattaattatctaataaacgtaattaaccatatattt |
738 |
Q |
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||||||||||| |||||| ||||| || |||||||||||||||||||| |
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| T |
27458944 |
tttgttatattcattaatcatctactacacgtaattaaccatatattt |
27458991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 598 - 668
Target Start/End: Complemental strand, 42467933 - 42467863
Alignment:
| Q |
598 |
gatggttaatgcagtttaaatttgtggttaattacgtttagtaaatgtttagtgaatatagcaaggtgtca |
668 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||| ||| ||| || |||| |||||||||| |
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| T |
42467933 |
gatggttaatgcagttcaaatatgtggttaattatgtttagtggatgcttaacgagtataacaaggtgtca |
42467863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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