View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3692_high_2 (Length: 421)
Name: NF3692_high_2
Description: NF3692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3692_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 3 - 402
Target Start/End: Complemental strand, 12104697 - 12104298
Alignment:
| Q |
3 |
aggaggagcacagagctggagagttccttccatttggagtaggaactagattgtgccctggaaatgatcttgctaagctggaaatctcagttttccttca |
102 |
Q |
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| T |
12104697 |
aggaggtgcacagagctggagagttccttccatttggagtaggaactagattgtgccctggaaatgatcttgctaagctggaaatctcagttttccttca |
12104598 |
T |
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| Q |
103 |
ccactttctcctcaactatgagtaaatatttttctccctctttttactactcacatgaannnnnnnctcacacacaatatattattgaagcaaagtatac |
202 |
Q |
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| T |
12104597 |
ccactttctcctcaactatgagtaaatatttttctccctctttttactactcacatgaatttttttctcacacacaatatattattgaagcaaagtatac |
12104498 |
T |
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| Q |
203 |
atcattccaatattaaaattgatcaaaagatactaatgttaatgttgtgtcttgctttcacaggttggaacaaatcaacccaaaatctccagtgagattc |
302 |
Q |
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| T |
12104497 |
atcattccaatattaaaattgatcaaaaggtactaatgttaatgttgtgtcttgctttcacaggttggaacaaatcaacccaaaatctccagtgagattc |
12104398 |
T |
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| Q |
303 |
ttgccacacacaaggccaatggacaattgcttggcaaggatcaagaaacgttcttctgtgtaatcctcagatggaaaaaagacgcatttggagactttac |
402 |
Q |
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| T |
12104397 |
ttgccacacacaaggccaatggacaattgcttggcaaggatcaagaaacgttcttcagtgtaatcctcagatggaaaaaagacgcatttggagactttac |
12104298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 12113437 - 12113361
Alignment:
| Q |
26 |
ttccttccatttggagtaggaactagattgtgccctggaaatgatcttgctaagctggaaatctcagttttccttca |
102 |
Q |
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| T |
12113437 |
ttccttccctttggagcaggaactagattgtgtcctggcaatgatcttgccaaaatggaaatagcagtttttcttca |
12113361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 12113004 - 12112946
Alignment:
| Q |
297 |
agattcttgccacacacaaggccaatggacaattgcttggcaaggatcaagaaacgttc |
355 |
Q |
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|||| ||| ||||| ||||||||||||||||||||||| | |||| |||||||| |||| |
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| T |
12113004 |
agatacttaccacatacaaggccaatggacaattgcttaggaagggtcaagaaatgttc |
12112946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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