View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3692_high_4 (Length: 309)

Name: NF3692_high_4
Description: NF3692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3692_high_4
NF3692_high_4
[»] chr8 (1 HSPs)
chr8 (19-309)||(29650589-29650880)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 29650589 - 29650880
Alignment:
Q  19 attaacacctctaatatgaaaaacttcnnnnnnnaatataaattgtggactctctaattcactttaccttgccaaatttcttcagaatctttataaatgc 118  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29650589 attaacacctctaatatgaaaaacttctttttttaatataaattgtggactctctaattcactttaccttgtcaaatttcttcagaatctttataaatgc 29650688  T
Q  119 aagcaggttcaaattcctaaaaaatcaatatgatgaagaaaacagtcacataannnnnnnnnnnncatatcaaatttaacacttattgtaagttcattat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  29650689 aagcaggttcaaattcctaaaaaatcaatatgatgaagaaaacagtcacataatttattttttttcatatcaaatttaacacttattgtaagttcattat 29650788  T
Q  219 t-nnnnnnnnnnntactttgactcacaaaattgacatcgaatttcgataacggctaaaatggttactgcaattcaaatatatggttaattac 309  Q
    |            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29650789 taaaaaaaaaatatactttgactcacaaaattgacatcgaatttcgataacggctaaaatggttactgcaattcaaatatatggttaattac 29650880  T

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