View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3692_high_5 (Length: 262)

Name: NF3692_high_5
Description: NF3692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3692_high_5
NF3692_high_5
[»] chr5 (7 HSPs)
chr5 (17-253)||(12531356-12531592)
chr5 (17-253)||(12547027-12547263)
chr5 (21-247)||(9866689-9866916)
chr5 (23-239)||(9894527-9894737)
chr5 (17-133)||(38735501-38735617)
chr5 (156-239)||(9869893-9869976)
chr5 (21-104)||(9869994-9870077)
[»] chr2 (5 HSPs)
chr2 (17-247)||(13576218-13576448)
chr2 (17-238)||(34571474-34571695)
chr2 (20-244)||(34578945-34579169)
chr2 (20-244)||(34584694-34584918)
chr2 (17-244)||(34562680-34562910)
[»] chr8 (8 HSPs)
chr8 (17-253)||(43479702-43479938)
chr8 (18-244)||(25865573-25865799)
chr8 (17-244)||(41943817-41944044)
chr8 (21-250)||(38799362-38799591)
chr8 (21-250)||(38821926-38822155)
chr8 (23-238)||(26592047-26592262)
chr8 (18-94)||(44343978-44344054)
chr8 (162-244)||(44343874-44343958)
[»] chr7 (3 HSPs)
chr7 (21-253)||(3929993-3930225)
chr7 (21-247)||(21317444-21317670)
chr7 (21-253)||(3928641-3928873)
[»] scaffold0197 (1 HSPs)
scaffold0197 (21-247)||(30882-31107)
[»] chr4 (6 HSPs)
chr4 (21-247)||(24860416-24860642)
chr4 (27-223)||(34748649-34748845)
chr4 (20-133)||(53290720-53290833)
chr4 (132-211)||(40035830-40035909)
chr4 (123-173)||(44771103-44771153)
chr4 (132-211)||(40045155-40045234)
[»] chr1 (4 HSPs)
chr1 (60-141)||(17769233-17769314)
chr1 (132-222)||(7594402-7594492)
chr1 (18-94)||(7594160-7594236)
chr1 (60-138)||(1539185-1539263)
[»] chr3 (1 HSPs)
chr3 (60-141)||(27440873-27440954)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 12531592 - 12531356
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531592 aaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 12531493  T
Q  117 aatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga 216  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  12531492 aatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcgga 12531393  T
Q  217 tctcacgaagtgcaacagttccaggacggaatctgtg 253  Q
    |||||||||||||||||||||| ||||||||||||||    
T  12531392 tctcacgaagtgcaacagttcctggacggaatctgtg 12531356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 12547027 - 12547263
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12547027 aaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 12547126  T
Q  117 aatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga 216  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  12547127 aatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcgga 12547226  T
Q  217 tctcacgaagtgcaacagttccaggacggaatctgtg 253  Q
    |||||||||||||||||||||| ||||||||||||||    
T  12547227 tctcacgaagtgcaacagttcctggacggaatctgtg 12547263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 247
Target Start/End: Original strand, 9866689 - 9866916
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||| ||||| || |||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||||| |||| || | ||| |    
T  9866689 ctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactctagaacc 9866788  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaaca--agtctctggaatggaagcttccttatcagaagctcggtactcttctgata--cttgcgga 216  Q
      ||||| || ||||||||||  ||| |||| |  | |  |||||||| || |||||||||||||  ||||||||  | ||||| || ||  ||| ||||    
T  9866789 tcagatcagtcttgaaatccttcgcg-tttccctcagatcagtctctgaaacggaagcttcctta--agaagctcaatgctcttttggtactcttacgga 9866885  T
Q  217 tctcacgaagtgcaacagttccaggacggaa 247  Q
    |||||||||| ||||| ||||||||||||||    
T  9866886 tctcacgaagcgcaacggttccaggacggaa 9866916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 9894737 - 9894527
Alignment:
Q  23 cttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcga 122  Q
    |||||||||||| || || | ||||||||| |||||||||| ||||| | |||||||| || ||||||||| ||||||||||||||| || ||||| |      
T  9894737 cttagcatgaatagcgcaaatattagtatcttcaaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactactctggaacctc 9894638  T
Q  123 agatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcac 222  Q
    ||| | || ||| |||||||||| ||||| |  ||||||||||| || |||||||||||||| ||||     || ||| |||| || || ||||||||||    
T  9894637 agaccagtcttg-aatcctgagcaatttccctcacaagtctctgaaacggaagcttccttattagaa-----gtgctcctctggtaattacggatctcac 9894544  T
Q  223 gaagtgcaacagttcca 239  Q
    |||| ||||| ||||||    
T  9894543 gaagagcaaccgttcca 9894527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 38735617 - 38735501
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||| | ||| || |||||||| ||||||||||||||||||||| |||||    ||| ||||||||||||||||||  |||| |||    
T  38735617 aaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagcgttgctatgg 38735518  T
Q  117 aatcgaagatctgtttt 133  Q
    || |  |||||||||||    
T  38735517 aacctgagatctgtttt 38735501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 9869976 - 9869893
Alignment:
Q  156 acaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacgaagtgcaacagttcca 239  Q
    ||||||||||  || |||||||||||||| |||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||    
T  9869976 acaagtctctaaaacggaagcttccttattagaagctcagtgctcttctggtacttacggatctcacgaagagcaacggttcca 9869893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 9870077 - 9869994
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaaca 104  Q
    |||||||||||||| || || |||||| |||| | |||||||||||||| |||||||||| |||||||||||||| || |||||    
T  9870077 ctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaagaccataaaca 9869994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 13576448 - 13576218
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13576448 aaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttga 13576349  T
Q  117 aatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga 216  Q
    || || ||||| ||||||||||||||||| ||||| ||||| | ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  13576348 aaacggagatccgttttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgagaagctcggtgctcttctgatacttgcgga 13576249  T
Q  217 tctcacgaagtgcaacagttccaggacggaa 247  Q
    | |||||||| || || ||||||||||||||    
T  13576248 tttcacgaagagcgacggttccaggacggaa 13576218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 34571474 - 34571695
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| ||||| ||   ||| |||  ||| |||    
T  34571474 aaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctgg 34571573  T
Q  117 aatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga 216  Q
    ||||| | ||| || |||||||||||||| |||||||||||||| | |||||||||||| || |  |||| ||| |||||||||||||||||||| || |    
T  34571574 aatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgta 34571673  T
Q  217 tctcacgaagtgcaacagttcc 238  Q
    |||||||||| ||||| |||||    
T  34571674 tctcacgaagagcaactgttcc 34571695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 34578945 - 34579169
Alignment:
Q  20 cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat 119  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||  | ||||| ||||| ||   ||| |||  ||| ||||||    
T  34578945 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat 34579044  T
Q  120 cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatct 219  Q
    |  | |||||| ||||||| |||||| |||||||||||||| | |||||||||||| || |  |||| ||| ||||||| |||||||||||| || ||||    
T  34579045 ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatct 34579144  T
Q  220 cacgaagtgcaacagttccaggacg 244  Q
    ||||||| ||||| |||||||||||    
T  34579145 cacgaagagcaactgttccaggacg 34579169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 34584694 - 34584918
Alignment:
Q  20 cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat 119  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||  | ||||| ||||| ||   ||| |||  ||| ||||||    
T  34584694 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaat 34584793  T
Q  120 cgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatct 219  Q
    |  | |||||| ||||||| |||||| |||||||||||||| | |||||||||||| || |  |||| ||| ||||||| |||||||||||| || ||||    
T  34584794 ctcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatct 34584893  T
Q  220 cacgaagtgcaacagttccaggacg 244  Q
    ||||||| ||||| |||||||||||    
T  34584894 cacgaagagcaactgttccaggacg 34584918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 34562680 - 34562910
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| ||||| ||   ||| |||   || |||    
T  34562680 aaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatgactctgg 34562779  T
Q  117 aatcgaagatctgttttgaaatcc---tgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgc 213  Q
    ||||  | ||| |  |||| |||    ||||| |||||||||||||| | ||||||||||||||| |  |||| ||| |||| ||||||||| || || |    
T  34562780 aatctgaaatccggcttgagatcaacatgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttac 34562879  T
Q  214 ggatctcacgaagtgcaacagttccaggacg 244  Q
    | ||||| ||||| ||||| |||||||||||    
T  34562880 gtatctcgcgaagagcaactgttccaggacg 34562910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 43479702 - 43479938
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||| || || || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||    
T  43479702 aaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctgg 43479801  T
Q  117 aatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga 216  Q
    || |  ||||| ||||||||||||||||||||||| | ||| | ||| ||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  43479802 aacctgagatcagttttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcgga 43479901  T
Q  217 tctcacgaagtgcaacagttccaggacggaatctgtg 253  Q
    |||||||||| ||||||||||||||||||||||||||    
T  43479902 tctcacgaagagcaacagttccaggacggaatctgtg 43479938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 25865799 - 25865573
Alignment:
Q  18 accctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgga 117  Q
    ||||||||||||||||| ||||| | |||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||  |||||||   || || |    
T  25865799 accctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagcttcctgaagtgcaagaacagcatgactctgaa 25865700  T
Q  118 atcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggat 217  Q
    |||  ||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| |  |||| |||||| ||||||||||||||||| |||||    
T  25865699 atctcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggat 25865600  T
Q  218 ctcacgaagtgcaacagttccaggacg 244  Q
    ||||||||| ||||| |||||||||||    
T  25865599 ctcacgaagagcaacggttccaggacg 25865573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 41944044 - 41943817
Alignment:
Q  17 aaccctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgg 116  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||||||||| || ||||| ||||| |||  |||||||  ||| |||    
T  41944044 aaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatggctctgg 41943945  T
Q  117 aatcgaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga 216  Q
    ||||  ||||| || |||||||| ||||| |||||||||||||| |  |||||||||||||| |  |||| ||| || ||||||||||| || || ||||    
T  41943944 aatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagcttacggatcaaaagatcagtactcttctggtatttacgga 41943845  T
Q  217 tctcacgaagtgcaacagttccaggacg 244  Q
    |||||||||||||||| || ||||||||    
T  41943844 tctcacgaagtgcaacggtaccaggacg 41943817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 38799591 - 38799362
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||| ||||| || || || || ||||| | |||||| |  |||||||||||||||||||||||||| ||||| || ||||| |||||||    
T  38799591 ctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatc 38799492  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctc 220  Q
      |||||||| |||||||| ||||| |||||||||||||| |  ||||||||||| || |  || |||||||| || |||||||||||||| ||||||||    
T  38799491 tcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctc 38799392  T
Q  221 acgaagtgcaacagttccaggacggaatct 250  Q
     |  |  |||||||||||||| | ||||||    
T  38799391 tctcaaagcaacagttccaggtctgaatct 38799362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 38821926 - 38822155
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||| ||||| || || || || ||||| | |||||| |  |||||||||||||||||||||||||| ||||| || ||||| |||||||    
T  38821926 ctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatc 38822025  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctc 220  Q
      |||||||| |||||||| ||||| |||||||||||||| |  ||||||||||| || |  || |||||||| || |||||||||||||| ||||||||    
T  38822026 tcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctc 38822125  T
Q  221 acgaagtgcaacagttccaggacggaatct 250  Q
     |  |  |||||||||||||| | ||||||    
T  38822126 tctcaaagcaacagttccaggtctgaatct 38822155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 26592262 - 26592047
Alignment:
Q  23 cttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcga 122  Q
    |||||||||||| || ||||| ||||||||||||||||| |||||||||||||| || || |||||||| || || || ||||||  ||| || || ||     
T  26592262 cttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacgg 26592163  T
Q  123 agatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcac 222  Q
    ||||| || |||||||||||||| || ||||||||||| | |||||| ||||| || |  || ||||| ||||| |||||||| ||||||||||||||||    
T  26592162 agatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcac 26592063  T
Q  223 gaagtgcaacagttcc 238  Q
    | ||||| || |||||    
T  26592062 ggagtgcgacggttcc 26592047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 44344054 - 44343978
Alignment:
Q  18 accctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaag 94  Q
    ||||||||||||||||| ||||| | ||| |||||||||||||| || || |||||||| ||||| ||||| |||||    
T  44344054 accctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaag 44343978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 44343958 - 44343874
Alignment:
Q  162 ctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcgga--tctcacgaagtgcaacagttccaggacg 244  Q
    |||||||| |||||||| |  |||| ||| | |||||||||||||||||| | ||  |||||||||| ||||| |||||||||||    
T  44343958 ctctggaagggaagcttacggatcaaaagtttggtactcttctgatacttacagatctctcacgaagagcaacggttccaggacg 44343874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 3929993 - 3930225
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||    
T  3929993 ctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatc 3930092  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctc 220  Q
    ||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| || ||||| || || |||||||||||||||||||||||    
T  3930093 gaagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcggatctc 3930192  T
Q  221 acgaagtgcaacagttccaggacggaatctgtg 253  Q
    ||||||||| || ||||| ||||||||||||||    
T  3930193 acgaagtgcgactgttcctggacggaatctgtg 3930225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 21317670 - 21317444
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  21317670 ctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttcttgaagagcagaaacagcactgctctggaatc 21317571  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctc 220  Q
      ||||| |||||||||||||||||||||||||||||||| |  ||||||||||| || |||||||||||||| || |||||||| ||||||||||| ||    
T  21317570 tgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc 21317471  T
Q  221 acgaagtgcaacagttccaggacggaa 247  Q
    |||||| || || ||||| ||||||||    
T  21317470 acgaagcgccacggttccgggacggaa 21317444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 3928641 - 3928873
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||| ||||| |||||  |||| |||||||||||||||| | | ||||||||   ||||||||||||||||||||| ||| | |||||||    
T  3928641 ctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagcgctgatctggaatc 3928740  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctc 220  Q
    | ||||| |||||||||||||||||||||||| |||| | ||| | ||| ||||| ||||| || |||||||| ||  |||| |||||||| | ||| ||    
T  3928741 ggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttgaaaggaagtttcctaatgagaagctcagtgatcttttgatacttcctgatttc 3928840  T
Q  221 acgaagtgcaacagttccaggacggaatctgtg 253  Q
    ||| | ||| || ||||| || | |||||||||    
T  3928841 acgcaatgcgactgttcctggtctgaatctgtg 3928873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 31107 - 30882
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||| || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31107 ctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctctggaatc 31008  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctc 220  Q
      ||||  |||||||||||||||||||||||||||||||| |  |||||| |||| || |||||||||||||| || |||||||| ||||||||||| ||    
T  31007 tgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc 30909  T
Q  221 acgaagtgcaacagttccaggacggaa 247  Q
    |||||| || || ||||| ||||||||    
T  30908 acgaagcgccacggttccgggacggaa 30882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 24860642 - 24860416
Alignment:
Q  21 ctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 120  Q
    |||||||||||||| || || ||||| ||||| ||||| |  ||||| |||||||||||||||||||||||||||||||||||||| || || ||||| |    
T  24860642 ctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctggaaac 24860543  T
Q  121 gaagatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctc 220  Q
    | ||||| ||||||||||| ||||||||||||||||| || |  ||||||||||| || |  || |||||||| || || || || ||||||||||| ||    
T  24860542 ggagatcggttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttc 24860443  T
Q  221 acgaagtgcaacagttccaggacggaa 247  Q
     ||||||||||| ||||| ||||||||    
T  24860442 gcgaagtgcaacggttccgggacggaa 24860416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 34748845 - 34748649
Alignment:
Q  27 gcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagat 126  Q
    ||||||||||||||||| |||||||||||||| | |||||| |||||||| ||||| |||||||| || || || || ||   ||| ||||| || ||||    
T  34748845 gcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttcttgcagcgccgacacggcggagctctggaaacggagat 34748746  T
Q  127 ctgttttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcacg 223  Q
    | || ||||||||||||||||| |||||||| || | |||||| || || || |  || || || ||||| |||||||| ||||| |||||||||||    
T  34748745 cagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacg 34748649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 53290833 - 53290720
Alignment:
Q  20 cctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaat 119  Q
    ||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||||||| |  ||| |||||||||||||||| |  |||| |||||     
T  53290833 cctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaacaacgttgctatggaac 53290734  T
Q  120 cgaagatctgtttt 133  Q
    |  |||||||||||    
T  53290733 ctgagatctgtttt 53290720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
Q  132 ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatactt 211  Q
    ||||| |||||||| ||||||||||| |  ||||||||||| |||||||| ||||  ||||| |||||||||||||||||    
T  40035909 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 40035830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 44771103 - 44771153
Alignment:
Q  123 agatctgttttgaaatcctgagcgatttcacgaacaagtctctggaatgga 173  Q
    ||||| |||||||||||||||||||||||||||||||| |  |||||||||    
T  44771103 agatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatgga 44771153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 40045234 - 40045155
Alignment:
Q  132 ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatactt 211  Q
    ||||| |||||||| ||||||||||| |  |||||||| || |||||||| ||||  ||||| ||||||||||| |||||    
T  40045234 ttgaagtcctgagcaatttcacgaaccaacctctggaaggggagcttcctgatcaagagctcagtactcttctggtactt 40045155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 17769233 - 17769314
Alignment:
Q  60 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct 141  Q
    |||||||||||||||||| ||   |||||||||||||||||||||| ||| || |  ||||| |||||||||||||||||||    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatcct 17769314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 7594402 - 7594492
Alignment:
Q  132 ttgaaatcctgagcgatttcacgaacaagtctctggaatggaagcttccttatcagaagctcggtactcttctgatacttgcggatctcac 222  Q
    |||||||| ||||| |||||||| ||||| | ||| ||||||||||| |  |||| |||||| ||||||||||| ||||| ||||||||||    
T  7594402 ttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctcac 7594492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 7594160 - 7594236
Alignment:
Q  18 accctcttagcatgaatggcacagagattagtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaag 94  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||| ||||| || ||||| ||||| ||||| |||||    
T  7594160 accctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgcttcctgaag 7594236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 1539185 - 1539263
Alignment:
Q  60 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaat 138  Q
    |||||||||||||||||| ||   ||||||||||||| |||||||| ||| || |  ||||| ||||||||||||||||    
T  1539185 aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaat 1539263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 27440954 - 27440873
Alignment:
Q  60 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcgaagatctgttttgaaatcct 141  Q
    |||||||||||||||||| ||   |||||||||||||||||||||   || || |  ||||| |||||||||||||||||||    
T  27440954 aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatcct 27440873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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