View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3692_low_3 (Length: 346)
Name: NF3692_low_3
Description: NF3692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3692_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 39741722 - 39741569
Alignment:
| Q |
58 |
caaaagttcctgatgttactgaacacttcactccagtgcccttaaaatttctttgtttgtgtgtaatttattacttaagagagatatttttcagaaagga |
157 |
Q |
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| T |
39741722 |
caaaaggtcctgatgttactgaacacttcactccagtgcccttaaaatttctttgtttgtgtgtaatttattacttaagagagatattttttagaaagga |
39741623 |
T |
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| Q |
158 |
aatataataaggtaaataatttaggatttagtttgcttggcctttgaatgtaaa |
211 |
Q |
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| T |
39741622 |
aatataataaggtaaataatttaggatttagtttgcttggcctttgaatgtaaa |
39741569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 212 - 322
Target Start/End: Complemental strand, 39741387 - 39741277
Alignment:
| Q |
212 |
gaaaaagcttgtcaaatttattaggttcattgaaacaaagcgtggactattggcctaaacaaaaaggaggtttaggagtggtaaatttaaaagcttttaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39741387 |
gaaaaagcttgtcaaatttattaggttcattgaaacaaagtgtggactattggcctaaacaaaaaggaggtttaggagtggtaaatttaaaagcttttaa |
39741288 |
T |
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| Q |
312 |
cctagctcttt |
322 |
Q |
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||||||||||| |
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| T |
39741287 |
cctagctcttt |
39741277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 39741793 - 39741745
Alignment:
| Q |
13 |
cctcttacatcatctttttatttcttgcactgccttgtgccaagccaaa |
61 |
Q |
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| T |
39741793 |
cctcttacatcatctttttatttcttgcactgccttgtgccaagccaaa |
39741745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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