View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_high_12 (Length: 481)
Name: NF3693_high_12
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 29871181 - 29870852
Alignment:
| Q |
11 |
aatgcaatagaacttacgcaaccactccttgggaagcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgt |
110 |
Q |
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| T |
29871181 |
aatgcaatagaacttacgcaactactccttgggaagcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgt |
29871082 |
T |
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| Q |
111 |
cccaatcgtctgctcgcttcggctagacgctaacccgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcc |
210 |
Q |
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| T |
29871081 |
cccaatcgtctgctcgcttcggctagacgctaacccgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcc |
29870982 |
T |
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| Q |
211 |
tcctcatcttcgtcgacacacgattgctgcgatcttgttcccatcgtttggcaacaaaaccctaattcagttgtagtttcgttttctgaggtgaaatgat |
310 |
Q |
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| T |
29870981 |
tcctcatcttcgtcgacacacgattgctgcgatcttgttcccatcgtttggcaacaaaaccctaattcagttgtagtttcgttttctgaggtgaaatgat |
29870882 |
T |
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| Q |
311 |
cgagtgcagagggagaatttgagttgtagg |
340 |
Q |
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| T |
29870881 |
cgagtgcagagggagaatttgagttgtagg |
29870852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 29865595 - 29865403
Alignment:
| Q |
46 |
gcagcatcatcatcctgtatatcaagatgattcaatctgagagcagtgttatcaccggcggctgtcccaatcgtctgctcgcttcggctagacgctaacc |
145 |
Q |
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| T |
29865595 |
gcagcatcatcatcctgtatatcaagatgattcaatttgagagcagcgttatcaccggcggctgtccccgtggtctgctcactccggctagacggtaac- |
29865497 |
T |
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| Q |
146 |
cgccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaaccgataaattcctcctcatcttcgtcgacacacgattgctgcg |
241 |
Q |
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| T |
29865496 |
--ccggcactcctgctggttgagcctgattgtcccgaaatcgtagttccacaacccatcaattcctcatcctcttcgtccacagacgattgatgcg |
29865403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 398 - 468
Target Start/End: Complemental strand, 29870794 - 29870724
Alignment:
| Q |
398 |
tacggcggtgagggctggtggttaccggtgagggaaaaagtagatctgattgaggggagaacggggtttgt |
468 |
Q |
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| T |
29870794 |
tacggcggtgagggatggtggttaccggtgagggaaaaagtagatctgattgaggggagagcggggtttgt |
29870724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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