View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_high_18 (Length: 443)

Name: NF3693_high_18
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_high_18
NF3693_high_18
[»] chr4 (3 HSPs)
chr4 (9-443)||(11797273-11797707)
chr4 (340-398)||(24613676-24613734)
chr4 (340-387)||(30982853-30982900)
[»] chr6 (9 HSPs)
chr6 (340-398)||(16766723-16766781)
chr6 (339-398)||(4118307-4118366)
chr6 (355-398)||(9522917-9522960)
chr6 (340-398)||(17302583-17302641)
chr6 (340-398)||(25038046-25038104)
chr6 (355-400)||(785445-785490)
chr6 (346-387)||(9107351-9107392)
chr6 (349-398)||(21395292-21395341)
chr6 (323-387)||(8365477-8365541)
[»] scaffold0008 (1 HSPs)
scaffold0008 (323-398)||(263330-263405)
[»] chr7 (6 HSPs)
chr7 (323-398)||(6028651-6028726)
chr7 (349-398)||(9408318-9408367)
chr7 (342-398)||(24339668-24339724)
chr7 (344-398)||(7438732-7438786)
chr7 (340-398)||(26033436-26033494)
chr7 (344-398)||(43243103-43243157)
[»] chr1 (5 HSPs)
chr1 (323-398)||(32461422-32461496)
chr1 (360-398)||(26526751-26526789)
chr1 (344-398)||(31694689-31694743)
chr1 (344-398)||(47989523-47989577)
chr1 (342-398)||(18556433-18556489)
[»] chr8 (2 HSPs)
chr8 (340-398)||(2572031-2572089)
chr8 (340-398)||(22652002-22652060)
[»] chr5 (5 HSPs)
chr5 (340-398)||(21542056-21542114)
chr5 (324-398)||(12641700-12641774)
chr5 (340-398)||(18592099-18592157)
chr5 (340-398)||(21522776-21522834)
chr5 (340-398)||(21533342-21533400)
[»] chr3 (6 HSPs)
chr3 (340-396)||(17005594-17005650)
chr3 (323-398)||(55212989-55213063)
chr3 (340-398)||(14209139-14209197)
chr3 (349-398)||(1509565-1509614)
chr3 (340-396)||(15796269-15796325)
chr3 (323-387)||(41961608-41961672)
[»] scaffold0086 (1 HSPs)
scaffold0086 (339-398)||(2954-3013)
[»] chr2 (4 HSPs)
chr2 (349-396)||(4882680-4882727)
chr2 (339-398)||(30717504-30717563)
chr2 (340-398)||(28524452-28524510)
chr2 (340-390)||(34337156-34337206)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 443
Target Start/End: Original strand, 11797273 - 11797707
Alignment:
Q  9 cataggtactgtttgagccatttatcttgaatcctttgctagtctcagtttgcttttgatttagcttgctcgtctttttgtatcttcttgaaccaacaat 108  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||  |  ||||||||||||||||||||||| ||||    
T  11797273 cataggtactacttgagccatttatcttgaatcctttgctagtctccgtttgcttatgatttaacttatta-tctttttgtatcttcttgaaccaccaat 11797371  T
Q  109 tgaaattgattttctcagttctgagacattttagtctaagaattactcagaaaatccataatttgtcggcccatcgtaaaaacaagctgcaaaacttgca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  11797372 tgaaattgattttctcagttctgagacattttagtctaagaattactcagaaaattcatagtttgtcggcccattgtaaaaacaagctgcaaaacttgca 11797471  T
Q  209 tatcatgaagcttgttcttccaaatgaagctattctcttgcattaacgtagttcagttttaacggactactttaataacataggactttgttgcactgac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||||||    
T  11797472 tatcatgaagcttgttcttccaaatgaagctattctcttgcattaacgtagttcaattttaacggattactttaacaacatagaactttgttgcactgac 11797571  T
Q  309 acttctgatcgaaagcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgtca-nnnnnnn 407  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||            
T  11797572 acttctgatcgaaagcgtgtcccagtatccaacacgtgttatgtctgacaacgacacaacaccgacacttgtgattacattaaattatgtcatttttttt 11797671  T
Q  408 ncaaaattttattggtgttgatgtgcccgtgtcaat 443  Q
     |||||||||||||||||||||||||||||||||||    
T  11797672 tcaaaattttattggtgttgatgtgcccgtgtcaat 11797707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 24613676 - 24613734
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| ||||||||||||||||  ||| ||||||||||| ||||||| ||||||||    
T  24613676 acacgtgtcgtgtctgacaccgacatgacaccgacacttgtacttacattgaattatgt 24613734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Original strand, 30982853 - 30982900
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattaca 387  Q
    |||||||| ||||||||||||||||| ||| |||||||| ||||||||    
T  30982853 acacgtgtcgtgtctgacaccgacacgacaccgacacttataattaca 30982900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 16766781 - 16766723
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  16766781 acacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 16766723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 4118307 - 4118366
Alignment:
Q  339 aacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||| ||||||| ||||| ||||||| | | ||||||||||||||||| ||||||||    
T  4118307 aacacgtattgtgtccgacactgacacaaaaccaacacttgtaattacatttaattatgt 4118366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 9522960 - 9522917
Alignment:
Q  355 gacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||    
T  9522960 gacaccgacacaacaccgacacttgtaattacactgaattatgt 9522917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 17302641 - 17302583
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||||||||||| | || ||||| |||  |||||||||||||||||| ||||||||    
T  17302641 acacgtgttgtgtctaatactgacacgacaatgacacttgtaattacattgaattatgt 17302583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 25038046 - 25038104
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| ||||| |||||| |||||| | ||||| ||||||||||| ||||||||||    
T  25038046 acacgtgtcgtgtcggacaccaacacaataccgacatttgtaattacactaaattatgt 25038104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 785445 - 785490
Alignment:
Q  355 gacaccgacacaacagcgacacttgtaattacattaaattatgtca 400  Q
    ||||||||||| ||| |||||||||| |||||||| ||||||||||    
T  785445 gacaccgacacgacaccgacacttgtgattacattgaattatgtca 785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 9107351 - 9107392
Alignment:
Q  346 gttgtgtctgacaccgacacaacagcgacacttgtaattaca 387  Q
    |||||||| ||||||||||| ||| |||||||||||||||||    
T  9107351 gttgtgtccgacaccgacacgacaccgacacttgtaattaca 9107392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 21395292 - 21395341
Alignment:
Q  349 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||    
T  21395292 gtgtccgacactgacacgacaccgacacttgtaattacactaaattatgt 21395341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 8365477 - 8365541
Alignment:
Q  323 gcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattaca 387  Q
    ||||||| |||| ||  |||||||| ||||| || |||||||| ||| |||||||||||||||||    
T  8365477 gcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 8365541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 263330 - 263405
Alignment:
Q  323 gcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||||  ||||| ||||||||| ||||||||||||||||| |||  ||||||| |||||||| | ||||||||    
T  263330 gcgtgtcttggtatcgaacacgtgtcgtgtctgacaccgacacgacactgacacttataattacactgaattatgt 263405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 6028726 - 6028651
Alignment:
Q  323 gcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||||| || ||| ||||| ||||  ||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  6028726 gcgtgtctcagtgtcgaactcgtgtcgtgttcgacactgacacgacaccgacatttgtaattacattaaattatgt 6028651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 398
Target Start/End: Original strand, 9408318 - 9408367
Alignment:
Q  349 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||||||| || ||| ||||||||||||||||| ||||||||||    
T  9408318 gtgtctgacaccgatacgacaccgacacttgtaattacactaaattatgt 9408367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 24339724 - 24339668
Alignment:
Q  342 acgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||| ||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  24339724 acgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 24339668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 7438786 - 7438732
Alignment:
Q  344 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||| |||| |||||||||||  ||| ||||||||||||||||||| ||||||||    
T  7438786 gtgtcgtgtttgacaccgacatgacaccgacacttgtaattacattgaattatgt 7438732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 26033436 - 26033494
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||||  |||||||||||||||| | | ||||||||||||||||| | ||||||||    
T  26033436 acacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaattatgt 26033494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 43243157 - 43243103
Alignment:
Q  344 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||  |||||  |||| ||| ||||||||||||||||||||||||||||    
T  43243157 gtgttgtgttcgacacaaacacgacatcgacacttgtaattacattaaattatgt 43243103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 32461422 - 32461496
Alignment:
Q  323 gcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||| |||| ||  |||||||| ||||| |||||||||||| || | ||||||||||||||||||||||||||    
T  32461422 gcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacaca-caccaacacttgtaattacattaaattatgt 32461496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 26526751 - 26526789
Alignment:
Q  360 cgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  26526751 cgacacaacaccgacacttgtaattatattaaattatgt 26526789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 31694689 - 31694743
Alignment:
Q  344 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||| ||||||||||| ||| ||||||||||||||| | | ||||||||    
T  31694689 gtgttgtgtccgacaccgacacgacaccgacacttgtaattatactgaattatgt 31694743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 47989577 - 47989523
Alignment:
Q  344 gtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||| ||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  47989577 gtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 47989523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 18556433 - 18556489
Alignment:
Q  342 acgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||| | ||||||||||| ||| ||| | | ||||||||||||||||||||||||    
T  18556433 acgtgtcgggtctgacaccgtcacgacaccaatacttgtaattacattaaattatgt 18556489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 2572031 - 2572089
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| ||||| ||||| ||||| ||| ||||||||||||||||| ||||||||||    
T  2572031 acacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgt 2572089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 22652060 - 22652002
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||| ||| ||||| ||||||||||| ||| ||||||||||||||| ||| ||||||||    
T  22652060 acacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaattatgt 22652002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 21542114 - 21542056
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| ||||| ||||||||||| ||| ||||||||||||||||| | ||||||||    
T  21542114 acacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgt 21542056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 12641774 - 12641700
Alignment:
Q  324 cgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| || || |||||||||||||||||||||| |||| |||  ||||| || ||||| | ||||||||||    
T  12641774 cgtgtctccgtgtcgaacacgtgttgtgtctgacaccaacacgacactgacacgtgcaattatactaaattatgt 12641700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 18592157 - 18592099
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||||||| ||||||||||| ||| || ||| | |||||||||| ||||||||    
T  18592157 acacgtgttgtgtccgacaccgacacgacaccggcacatataattacattgaattatgt 18592099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 21522834 - 21522776
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| ||||| ||||||||||| ||| ||||| ||||||||||| | ||||||||    
T  21522834 acacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21522776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 21533400 - 21533342
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| ||||| ||||||||||| ||| ||||| ||||||||||| | ||||||||    
T  21533400 acacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaattatgt 21533342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 17005594 - 17005650
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattat 396  Q
    ||||||||| ||||||||||| |||||||| |||||||| |||||||| | ||||||    
T  17005594 acacgtgttatgtctgacaccaacacaacaccgacacttataattacactgaattat 17005650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 55213063 - 55212989
Alignment:
Q  323 gcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||||| || ||  |||||||||||| | |||||||||||| || |||||||||||||| || ||||||||||    
T  55213063 gcgtgtctcggtgtcggacacgtgttgtgcccgacaccgacaca-caccgacacttgtaattgcactaaattatgt 55212989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 14209197 - 14209139
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||| ||||| ||||||||||| |||  |||||||||||||||| | ||||||||    
T  14209197 acacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaattatgt 14209139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 1509614 - 1509565
Alignment:
Q  349 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||| |||||||| || ||| ||||||||||||||||| ||||||||||    
T  1509614 gtgtcggacaccgaaacgacaccgacacttgtaattacactaaattatgt 1509565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 15796269 - 15796325
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattat 396  Q
    |||||||||||||| |||||| |||| ||| ||||| ||||||||||| | ||||||    
T  15796269 acacgtgttgtgtccgacacctacacgacaccgacaattgtaattacactgaattat 15796325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 41961608 - 41961672
Alignment:
Q  323 gcgtgtctcagtatccaacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattaca 387  Q
    ||||||| |||| ||  |||||||| ||||| || |||||||| ||| |||||||||||||||||    
T  41961608 gcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattaca 41961672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 3013 - 2954
Alignment:
Q  339 aacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||||| |||||||| |||||||| |||  || ||||||||||||| ||||||||||    
T  3013 aacacgtgtcgtgtctgataccgacacgacactgatacttgtaattacactaaattatgt 2954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 4882680 - 4882727
Alignment:
Q  349 gtgtctgacaccgacacaacagcgacacttgtaattacattaaattat 396  Q
    ||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  4882680 gtgtctgacaccgacacgacatcgacacttgtaattacactgaattat 4882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 30717504 - 30717563
Alignment:
Q  339 aacacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    ||||||||| ||||| |||| |||||| ||| ||||||||||||||||| | ||||||||    
T  30717504 aacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaattatgt 30717563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 28524510 - 28524452
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacattaaattatgt 398  Q
    |||||||||||||| |||||| |||||||| |||||| | |||||||| | ||||||||    
T  28524510 acacgtgttgtgtccgacaccaacacaacaacgacacatataattacactgaattatgt 28524452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 34337156 - 34337206
Alignment:
Q  340 acacgtgttgtgtctgacaccgacacaacagcgacacttgtaattacatta 390  Q
    |||||||||||||| ||||||||||  ||| ||||||||||||||| ||||    
T  34337156 acacgtgttgtgtccgacaccgacaggacaccgacacttgtaattaaatta 34337206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University