View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_high_22 (Length: 422)
Name: NF3693_high_22
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 17056779 - 17056919
Alignment:
| Q |
2 |
gagacattcaaggattttcttaaagggagaagagacggcaaaacaagaagagttttctgaaagagcttacctggtacgattcttttactctccaatattt |
101 |
Q |
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| T |
17056779 |
gagacattcaaggattttcttaaagggagaagagacggcaaaacaagaagagttctctgaaagagcttacctggtacgattcttttactctccaatattt |
17056878 |
T |
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| Q |
102 |
gaagttgtgattttgtgtttggtagaatgtagtcatgttac |
142 |
Q |
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| T |
17056879 |
gaagttgtgattttatgtttggtagaatgtagtcatgttac |
17056919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 239 - 407
Target Start/End: Original strand, 17057036 - 17057206
Alignment:
| Q |
239 |
gcaagttttatctatcacaatgtaatagcatttatacgtgttcatttttagattgatgatgtgaatgtcagaattatagttagtcgctatggtttaattg |
338 |
Q |
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| T |
17057036 |
gcaagttttatctatcattatgtaatagcatttatacgtgttcatttttagattaatgatgtgattgtcagaattatagttagtcgctatggattaattg |
17057135 |
T |
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| Q |
339 |
gcaaaaatgacactacactcta-atccttttta-ttacttttatacacaatctagccgtcgctatgttact |
407 |
Q |
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| T |
17057136 |
gcaaaaatgacgctacactgtagatcctttttatttatttttatacacaatctagccgtcgctatgttact |
17057206 |
T |
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