View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3693_high_23 (Length: 412)
Name: NF3693_high_23
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 55544445 - 55544080
Alignment:
| Q |
1 |
attgaggtcttctatcttttaaaccgaggcaccatccacttactctnnnnnnntatttgtnnnnnnnttaattaatctttcctctctgcaatgc-ggttt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
55544445 |
attgaggtcttctatcttttaaaccgaggcaccatccacttactctaaaaaaatatttgtaaaaaaattaattaatctttcctctctgcaatgctggttt |
55544346 |
T |
|
| Q |
100 |
tcatccttcacaaatcgaccaacaataatctccatgttttctcccctacacaagaagaaccttcactatctaatatgcattcattttctctactagtttc |
199 |
Q |
| |
|
| ||||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55544345 |
ttatcctccgcaaatcgaccaacaataatctccctgttttctcccctacacaacaagaaccttcactatctaatatgcattcattttctctactagtttc |
55544246 |
T |
|
| Q |
200 |
gtatttggtgaatctgttgtctttgtatattacttttcccaaattaacaacctcatccaaaacctcttgcacaagtttcaaatgcctacgcccaacatca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55544245 |
ctatttggtgaatctgttgtctttgtatattacttttcccaaattaacaacctcatccaaaacctcttgcacaagtttcaaatgcctacgcccaacatca |
55544146 |
T |
|
| Q |
300 |
aaacaagcgacaacagcattatatg----ccccagaaaatacctttcaattttggttgcgaatacc |
361 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55544145 |
taacaagcgacaacagcattatatatataccccagaaaatacctttcaattttggttgcgaatacc |
55544080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University