View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_high_30 (Length: 325)
Name: NF3693_high_30
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 42 - 305
Target Start/End: Original strand, 35473797 - 35474059
Alignment:
| Q |
42 |
tatgcacttgatgccctcataacctttctttgttgtagtgtaacaaaccagttttcttttgtatattcaggggttnnnnnnncagtaataaccaaagttg |
141 |
Q |
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| T |
35473797 |
tatgcacttgatgccctcagaacctttctttgttgtagtgtaacaaactagttttcttttgtatattcaggggttaaaaaaacactaataaccaaagttg |
35473896 |
T |
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| Q |
142 |
cnnnnnnnnggttcattaacaaatggcttttgagcatgaagacttctttacccaagaatggaaagccattccaaattctggcacagaaacagaaagaaat |
241 |
Q |
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| T |
35473897 |
caaaaaaa-ggttcattaacaaatggcttttgagcatgaagacttctttacccaagaatggaaagccattccaaattctggcacagaaacagaaaaaaat |
35473995 |
T |
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| Q |
242 |
tgtgacagttgttttgattgcaatatctgcttagactttgcacatgaaccagtagtcacactct |
305 |
Q |
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| T |
35473996 |
tgtgacagttgttttgattgcaatatctgcttagactttgcacatgaaccagtagtcacactct |
35474059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 35467220 - 35467350
Alignment:
| Q |
170 |
tttgagcatgaagacttctttacccaagaatggaaagccattccaaattctggcacagaaacaga--aaga-aattgtgacagttgttttgattgcaata |
266 |
Q |
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| T |
35467220 |
tttgagcatgaagagttctttaaccaagaatggaaagccgatggaaattctgtgacagagacagagaaagagaatattgacaattgttttgattgccaca |
35467319 |
T |
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| Q |
267 |
tctgcttagactttgcacatgaaccagtagt |
297 |
Q |
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| T |
35467320 |
tctgcttagattttgcacacgaaccagtagt |
35467350 |
T |
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