View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_high_31 (Length: 318)
Name: NF3693_high_31
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 40860693 - 40860482
Alignment:
| Q |
21 |
aggattaatattcatcacttgtattgacatttctctcaacnnnnnnnnntcacttgtattgacacgtgtagttggaccagaaattgcaactttcttaata |
120 |
Q |
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| T |
40860693 |
aggattaatattcatcacttgtattgacatttctctcaaaaaaaaaaaaatacttgtattgacacgtgtagttggaccagaaattgcaactttcttaata |
40860594 |
T |
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| Q |
121 |
gaataaaataaagtattttaaagaaataaatattgtgggattcactcatcagagtggcagcaaccgagtccacaaaaatctcatgtacttcataacctta |
220 |
Q |
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| T |
40860593 |
gaataaaataaaatattttaaagaaataaatattgtgggattcactcatcagagtggcagcaaccgagtccacaaaaatctcatgtacttcataacctta |
40860494 |
T |
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| Q |
221 |
gcctttggtctt |
232 |
Q |
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||||| |||||| |
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| T |
40860493 |
gccttaggtctt |
40860482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 40860451 - 40860392
Alignment:
| Q |
243 |
cttagcctttggaccttaacttccacgttaatatttccactagttttaatgatttatatt |
302 |
Q |
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| T |
40860451 |
cttagcctttggaccttaacttccacgttaatatttccactagttttaatgatttatatt |
40860392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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