View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_high_38 (Length: 291)
Name: NF3693_high_38
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 8855620 - 8855890
Alignment:
| Q |
2 |
gatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtggtagttaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
8855620 |
gatcaggtttgaaatccccgggatgatcaccatatgtccctcaaaagcagaagagaaaatgaaaacaggtaccaatatgatcagtattggtggtagttaa |
8855719 |
T |
|
| Q |
102 |
tcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaagcaac |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
8855720 |
tcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataaacaaaaaacaaaacttgc-tgtaacagaaagcaac |
8855818 |
T |
|
| Q |
202 |
ttcttatatatagtaataaacattttaagta-tgtactacatgaacttgagagtcaataaccatatgctaag |
272 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8855819 |
ttcttatatatagtaataaacattttaagtacaatactacatgaacttgagagtcaataaccatatgctaag |
8855890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 25556303 - 25556037
Alignment:
| Q |
1 |
cgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtggtagtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
25556303 |
cgatcaggtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaacaagtcccaatatgatcagtattggtggtagtta |
25556204 |
T |
|
| Q |
101 |
atcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgac-ttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaagca |
199 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25556203 |
atcgaccacatcaagcaaaaacgagttaatcactctgatagttatacgacattgagtatttgaat-------aaacaaaacctgcttgtaacagaaagca |
25556111 |
T |
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| Q |
200 |
acttcttatatatagtaataaacattttaagta-tgtactacatgaacttgagagtcaataaccatatgctaag |
272 |
Q |
| |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
25556110 |
acttcttatatgtagtaataaacattttaagtacaatcctacatgaacttgagagtcaataaccatatgctaag |
25556037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 14367533 - 14367268
Alignment:
| Q |
8 |
gtttgaaatccccgggatgatcaccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtggtagttaatcgacc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| | ||| ||||||||||||||||||||||||| ||||| || |
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| T |
14367533 |
gtttgaaatccccgggatgatcaccatatgtccctcaaaagaagaagggaaaatgaaacaaggtaccaatatgatcagtattggtggtagtcaatcgtcc |
14367434 |
T |
|
| Q |
108 |
acatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaagcaacttctta |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||| |
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| T |
14367433 |
acatcaagcaaaaaagagttaatcactcagatagttatacgacttgagtatttgaataaacaaaaaacaaaacttg-ttgtaacaggaagcaacttctta |
14367335 |
T |
|
| Q |
208 |
tatatagtaataaacat-tttaagta-tgtactacatgaacttgagagtcaataaccatatgctaag |
272 |
Q |
| |
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||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
14367334 |
tatattgtaataaacatctttaagcacaatactacatgaacttgagagtcaataaccatatgctaag |
14367268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 19576033 - 19576277
Alignment:
| Q |
29 |
caccatatgtccctcgaaagcagaagagaaaatgaaaataagtatcaatatgatcagtattggtggtagttaatcgaccacatcaagcaaaaaagagtta |
128 |
Q |
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||||||||||||||| |||| |||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19576033 |
caccatatgtccctcaaaagaagaagagaaaatgaaacaaggtaccaatatgatcagtattggtggtagtcaatcgaccacatcaagcaaaaaagagtta |
19576132 |
T |
|
| Q |
129 |
atcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaagcaacttcttatatatagtaataaacat-ttt |
227 |
Q |
| |
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|||| || |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
19576133 |
atcattcagatagttatacgacttgagtatttgaataaacaaaaaacaaaacttg-ttgtaacaggaagcaacttcttatatatagtaataaacatcttt |
19576231 |
T |
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| Q |
228 |
aagta-tgtactacatgaacttgagagtcaataaccatatgctaag |
272 |
Q |
| |
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||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
19576232 |
aagcacaatactacatgaacttgagagtcaataaccatatgctaag |
19576277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 26383562 - 26383381
Alignment:
| Q |
98 |
ttaatcgaccacatcaagcaaaaaagagttaatcactcggatagttatacgacttgagtatttgaataagcaaaaaacaaaacctgcttgtaacagaaag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||| ||| |||||||| ||| |
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| T |
26383562 |
ttaatcgaccacatcaagcaaaaaagagttaatgacttggatagttatacaacttgagtatttgaataaacaaaaaacaaaacttgc-tgtaacaggaag |
26383464 |
T |
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| Q |
198 |
caacttcttatata-------tagtaataaacattttaagt-atgtactacatgaacttgagagtcaataaccatatgctaag |
272 |
Q |
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|||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
26383463 |
caacttcttatatataaatagtagtaataaacatttcaagtgcaatactacatgaacttgagactcaataaccatatgctaag |
26383381 |
T |
|
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