View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3693_high_42 (Length: 277)
Name: NF3693_high_42
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_42 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 3216588 - 3216319
Alignment:
| Q |
8 |
aatcaaaggggaattttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgcta |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3216588 |
aatcaaaagggaattttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgaagcaccatggattctaactgttggtgcta |
3216489 |
T |
|
| Q |
108 |
gcacaaccgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacact |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3216488 |
gcacaactgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacact |
3216389 |
T |
|
| Q |
208 |
gttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcctatttcc |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3216388 |
gttgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcctatttcc |
3216319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 3208647 - 3208383
Alignment:
| Q |
10 |
tcaaaggggaattttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgctagc |
109 |
Q |
| |
|
||||| ||| ||||| |||||||| ||||||| ||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
3208647 |
tcaaaaggggatttttgttagttgttcagctgcaaattcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagc |
3208548 |
T |
|
| Q |
110 |
acaaccgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgt |
209 |
Q |
| |
|
|||| || |||||||| || ||| ||||||| |||||| ||||| | ||||| ||||||||||||| || ||||||||||| |||||||| ||| | | |
|
|
| T |
3208547 |
acaattgacagaaaaattgaggcagtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattat |
3208448 |
T |
|
| Q |
210 |
tgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgtggtcctatt |
274 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
3208447 |
tgccacttgtgtatgcaggttcaattaatacaagtgatgattccattgccttttgtggtcctatt |
3208383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 3202673 - 3202418
Alignment:
| Q |
10 |
tcaaaggggaattttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgctagc |
109 |
Q |
| |
|
||||| ||||||||| |||||||| || |||||||||| |||||| | |||||||| | ||||||| |||||||||||| ||||||||||||| ||| |
|
|
| T |
3202673 |
tcaaaagggaatttttgttagttgttctgctggaaattcaggtccttttcatggtacattggctaatgaagcaccatggattttaactgttggtgccagc |
3202574 |
T |
|
| Q |
110 |
acaaccgatagaaaaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgt |
209 |
Q |
| |
|
|||| || ||||||||||| ||| ||||||| ||||| | ||| ||||| | ||||||||||| || ||||||||||| |||||||||||| | | |
|
|
| T |
3202573 |
acaattgacagaaaaatagaggcagtagctaagcttggggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcaacattat |
3202474 |
T |
|
| Q |
210 |
tgccacttgtgtatgcaggttctgttaatataagtgataattccattgccttttgt |
265 |
Q |
| |
|
|||||||||||||||||||| | |||| | ||||||| ||| ||||||||||||| |
|
|
| T |
3202473 |
tgccacttgtgtatgcaggtgcaattaacacaagtgatgatttcattgccttttgt |
3202418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University