View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_high_55 (Length: 247)
Name: NF3693_high_55
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_high_55 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 10818760 - 10818848
Alignment:
| Q |
14 |
agacataaatacctaaaaagaagtccaacgtataataaagctcgtgatcgggcaaagtttcattggcgtgacccatgcaatcacaaagc |
102 |
Q |
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| T |
10818760 |
agacataaatacctaaaaagaagtccaacgtataataaagctcgtgatcgggcaaagtttcattggcgtgacccatgcaatcacaaagc |
10818848 |
T |
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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 10818884 - 10818978
Alignment:
| Q |
138 |
ggaaattcttatgtatttttcacaattctctacaaatatacaagcnnnnnnngtgaagtcagtttatgatccccacttagataagctaatgatatt |
233 |
Q |
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| T |
10818884 |
ggaaattcttatgtatttttcacaattctctacaaatatacaagc-ttttttgtgaagtcagtttatgatccccacttagataagctaatgatatt |
10818978 |
T |
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