View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_high_62 (Length: 234)

Name: NF3693_high_62
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_high_62
NF3693_high_62
[»] chr2 (17 HSPs)
chr2 (1-220)||(9321121-9321340)
chr2 (31-220)||(9328741-9328930)
chr2 (1-220)||(9274663-9274879)
chr2 (52-177)||(10347979-10348104)
chr2 (50-174)||(9065407-9065532)
chr2 (34-174)||(16269277-16269417)
chr2 (1-172)||(9060901-9061072)
chr2 (50-206)||(10336000-10336156)
chr2 (1-174)||(8573265-8573438)
chr2 (1-174)||(9316219-9316392)
chr2 (1-179)||(9283956-9284134)
chr2 (50-177)||(12005933-12006060)
chr2 (50-177)||(12012361-12012488)
chr2 (1-174)||(9292122-9292295)
chr2 (69-173)||(12018716-12018820)
chr2 (71-177)||(7115475-7115581)
chr2 (119-177)||(10353303-10353361)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-175)||(4673-4847)
[»] chr8 (1 HSPs)
chr8 (1-174)||(41966489-41966662)
[»] chr1 (4 HSPs)
chr1 (26-175)||(29467580-29467729)
chr1 (38-175)||(29423458-29423595)
chr1 (53-175)||(29453131-29453253)
chr1 (51-175)||(29443146-29443270)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9321340 - 9321121
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321340 cgtggaaaataattcccagtatgccgtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 9321241  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctgatgttgataatagtaatgagagtttt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9321240 tggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttcataatagtaatgagagtttt 9321141  T
Q  201 gaaattgatgttgatgtttt 220  Q
    ||||||||||||||||||||    
T  9321140 gaaattgatgttgatgtttt 9321121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 9328930 - 9328741
Alignment:
Q  31 ctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgc 130  Q
    ||||| |||||||||||  || ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9328930 ctcttgtctatgctcaaaacacgggggttttggttgagaattctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgc 9328831  T
Q  131 atttaaccaaacacttgaaattttcaatgtggttcctcttcctgatgttgataatagtaatgagagttttgaaattgatgttgatgtttt 220  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9328830 gtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgttgataatagtaataagagttttgaaattgatgttgatgtttt 9328741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9274879 - 9274663
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    |||||||||||||||||||| ||| |||| ||||||  |||| ||||  ||||||| |||||||||||||||||||||||||| ||||||| | | || |    
T  9274879 cgtggaaaataattcccagtatgccgtacgctcttaaatatgttcaagccatggggatttttgttgagaattctcttcactgggtaatgactagggaaat 9274780  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctgatgttgataatagtaatgagagtttt 200  Q
    || ||  | ||| |||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |  |  |||||   ||||||||||    
T  9274779 tgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaatgtggttcctcttcctgaagaagtcaatag---tgagagtttt 9274683  T
Q  201 gaaattgatgttgatgtttt 220  Q
    |||||| |||||| ||||||    
T  9274682 gaaattaatgttgttgtttt 9274663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 10348104 - 10347979
Alignment:
Q  52 tgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaaat 151  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |||||||  |||||||||||    
T  10348104 tgggggtttttgttgagaattctattcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaat 10348005  T
Q  152 tttcaatgtggttcctcttcctgatg 177  Q
    |||||||| |||||||||||||||||    
T  10348004 tttcaatgaggttcctcttcctgatg 10347979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 9065407 - 9065532
Alignment:
Q  50 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaa 149  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||||| | | | |||||||||||||||||||||||||||||||  |||||||||    
T  9065407 catgggggtttttgttgagaattctattcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaa 9065506  T
Q  150 attttcaa-tgtggttcctcttcctg 174  Q
    |||||||| || |||||| |||||||    
T  9065507 attttcaattgaggttccccttcctg 9065532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 16269417 - 16269277
Alignment:
Q  34 ttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatt 133  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||| ||| |||||| | ||||||||||  || ||||||||||||||||| || || ||    
T  16269417 ttatttatgctcaaatcatgggggtttttgttgagaattctattcgctgtataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtt 16269318  T
Q  134 taaccaaacacttgaaattttcaatgtggttcctcttcctg 174  Q
    ||||| ||||||||| |||||||| | ||||||||||||||    
T  16269317 taacctaacacttgagattttcaacgaggttcctcttcctg 16269277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 9060901 - 9061072
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    ||||||||| |||||||||| ||| |||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| | ||| | ||||||||    
T  9060901 cgtggaaaacaattcccagtatgccgtacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggttatggccaagaaact 9061000  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcc 172  Q
    || ||| | | ||||||  |||||||| ||||||||||  ||||||||||||||||||| ||||||||||||    
T  9061001 tgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttcaatgaggttcctcttcc 9061072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 10336156 - 10336000
Alignment:
Q  50 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaa 149  Q
    |||||| |||||||||||||||||||||||||||||||||||   |||||||| ||| ||||| |||| |||||||| ||| ||||| | | |||||||     
T  10336156 catgggtgtttttgttgagaattctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgag 10336057  T
Q  150 attttcaatgtggttcctcttcctgatgttgataa-tagtaatgagagttttgaaatt 206  Q
    |||||||||| |||||||||||||||||   |||| |||||||||||||||| |||||    
T  10336056 attttcaatgaggttcctcttcctgatg-aaataattagtaatgagagttttaaaatt 10336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 8573265 - 8573438
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    ||||||||| ||||||||||  ||  ||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| | ||| | ||||||||    
T  8573265 cgtggaaaacaattcccagtacgccatacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggttatggccaagaaact 8573364  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctg 174  Q
    || ||| | | ||||||  |||||||| ||||||||||  ||||||||||||||| | | ||||||||||||||    
T  8573365 tgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttctacgaggttcctcttcctg 8573438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 9316392 - 9316219
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    ||||||||| |||||||||| ||| |||| |||||   |||| ||||  |||||||||||||||| ||||||||||||||||| |||||||  || ||      
T  9316392 cgtggaaaacaattcccagtatgccgtacgctcttcaatatgttcaagccatgggggtttttgttcagaattctcttcactgggtaatgactcagcaaag 9316293  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctg 174  Q
    ||  |  | ||| |||| ||| ||||| || ||||||| ||||||||| |||||||||||||||||||||||||    
T  9316292 tgaagagtcacacccttgtttcattgtcgcgtttaacctaacacttgagattttcaatgtggttcctcttcctg 9316219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 9283956 - 9284134
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    |||||||||||||||| | | |||  ||| || ||  ||||||||||  ||||||||||||||||||||||||| ||||||||||||||  |||||| ||    
T  9283956 cgtggaaaataattcctattatgccctacactgtttactatgctcaagccatgggggtttttgttgagaattctattcactggataatggaaaagaatct 9284055  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctgatgtt 179  Q
    || ||| | | | | || ||||||||| || ||||||| |||||| ||  ||||||| | |||||||||||||| ||||    
T  9284056 tgatgggtcagacctttgtttaattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctgctgtt 9284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 12005933 - 12006060
Alignment:
Q  50 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaa 149  Q
    |||||||||||||||||||||||||||||||||||| |||   ||||||| || ||| |||||||    ||||||| | || ||||||| |||||||||     
T  12005933 catgggggtttttgttgagaattctcttcactggatgatggtcaagaaacctgatgggttacatcagcgtttaattttcgcgtttaacctaacacttgag 12006032  T
Q  150 attttcaatgtggttcctcttcctgatg 177  Q
     ||||||| | ||||||| |||||||||    
T  12006033 gttttcaacgaggttccttttcctgatg 12006060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 12012361 - 12012488
Alignment:
Q  50 catgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaa 149  Q
    |||||| ||||||||||||||||||||||| ||||||| |   ||||| | || ||| ||||||||   ||||||||| || ||||||| |||||||||     
T  12012361 catgggagtttttgttgagaattctcttcattggataacggtgaagaatcctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgag 12012460  T
Q  150 attttcaatgtggttcctcttcctgatg 177  Q
     ||||||||| ||||||  |||||||||    
T  12012461 cttttcaatgaggttccatttcctgatg 12012488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 9292295 - 9292122
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    |||||||||| ||||| ||| ||| |||| |||||   |||| ||||   ||||||||||||||| |||||||| | |||||| |||||||   || | |    
T  9292295 cgtggaaaatcattcctagtatgccgtacgctcttcaatatgttcaagctatgggggtttttgttcagaattctatccactgggtaatgactcggacaat 9292196  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctg 174  Q
    || ||  | ||| |||| ||| ||||| || ||||||| ||||||||| | |||||||||||||||| ||||||    
T  9292195 tgttgagtcacacccttgtttcattgtcgcttttaacctaacacttgagactttcaatgtggttccttttcctg 9292122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 173
Target Start/End: Original strand, 12018716 - 12018820
Alignment:
Q  69 aattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctc 168  Q
    ||||||||||| ||||||||||||| |||| ||| |   || || ||||  |||||||| ||||||||||  ||||| || |||||||||| ||||||||    
T  12018716 aattctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggttcctc 12018815  T
Q  169 ttcct 173  Q
    |||||    
T  12018816 ttcct 12018820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 177
Target Start/End: Original strand, 7115475 - 7115581
Alignment:
Q  71 ttctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctctt 170  Q
    |||| |||||||||||||| |   |||||||| ||  | ||| |||| ||||||||| || ||||||| |||||||||   ||||| || ||||||||||    
T  7115475 ttctgttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctctt 7115574  T
Q  171 cctgatg 177  Q
    |||||||    
T  7115575 cctgatg 7115581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 10353361 - 10353303
Alignment:
Q  119 tttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctgatg 177  Q
    ||||||| | || ||||||| ||||||||| | |||||||| |||||||||||||||||    
T  10353361 tttaattctcgcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatg 10353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 4847 - 4673
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    |||||||||||||||| | | ||| |||| | ||| ||| |||||||  |||||||||||| |||||| ||||| |||||||||||||| ||||||||||    
T  4847 cgtggaaaataattcctactatgccgtacgcccttgtctttgctcaaaccatgggggttttggttgaggattctattcactggataatggcaaagaaact 4748  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctga 175  Q
    || ||| |||||||||||| ||||||| || ||||||| |||||||||||||||||||| |||||||||||||||    
T  4747 tgatgggttacatccttctctaattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctga 4673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 41966489 - 41966662
Alignment:
Q  1 cgtggaaaataattcccagtttgcggtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaact 100  Q
    |||||||||||||||||||  ||| |||  |||||  ||||||||||  |||||||||||||||| | ||||||||||||||||||||||| ||| ||||    
T  41966489 cgtggaaaataattcccagaatgccgtatgctctttactatgctcaaaccatgggggtttttgttcacaattctcttcactggataatgaccaaggaact 41966588  T
Q  101 tggtggattacatccttctttaattgttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctg 174  Q
    || ||||||||| |||| ||||||||| || ||||||| ||||||||| ||||||||   ||||||||||||||    
T  41966589 tgatggattacacccttgtttaattgtcgcgtttaacctaacacttgagattttcaaccaggttcctcttcctg 41966662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 175
Target Start/End: Original strand, 29467580 - 29467729
Alignment:
Q  26 gtactctcttatctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaatt 125  Q
    ||||||||||  |||| |||||  ||||| |||||||||||||||||||||||| ||||||||||  |||||||||| ||| |||||  ||| |||||||    
T  29467580 gtactctctttactatcctcaaaccatggtggtttttgttgagaattctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaatt 29467679  T
Q  126 gttgcatttaaccaaacacttgaaattttcaatgtggttcctcttcctga 175  Q
     | || ||||||| ||  ||||| |||||||||| |||||||||||||||    
T  29467680 atcgcgtttaacctaaagcttgagattttcaatgaggttcctcttcctga 29467729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 29423595 - 29423458
Alignment:
Q  38 ctatgctcaattcatgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaac 137  Q
    ||||||||||   |||||||||||||||||||||||||||||||||||||||||  ||||||||| |   ||  | |||  | |||||||||| ||||||    
T  29423595 ctatgctcaaacaatgggggtttttgttgagaattctcttcactggataatgacggagaaacttgatccgttgaaacctcgtgtaattgttgcgtttaac 29423496  T
Q  138 caaacacttgaaattttcaatgtggttcctcttcctga 175  Q
    | ||||| ||| |||||||||| ||||||| |||||||    
T  29423495 ctaacacatgagattttcaatgaggttccttttcctga 29423458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 29453131 - 29453253
Alignment:
Q  53 gggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaaatt 152  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||   || ||  ||  | |||||||||| ||||||| |||||  || |||    
T  29453131 gggggtttttgttgagaattctcttcactggataatgactcggaaacttggtcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt 29453230  T
Q  153 ttcaatgtggttcctcttcctga 175  Q
    ||||||| ||||||| |||||||    
T  29453231 ttcaatgaggttccttttcctga 29453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 29443146 - 29443270
Alignment:
Q  51 atgggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaaccaaacacttgaaa 150  Q
    ||||||| ||||||||||||||| ||||||||| |||||||   |||||||| |   || || |||  |  |||||| || ||||||| |||||| || |    
T  29443146 atgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgaga 29443245  T
Q  151 ttttcaatgtggttcctcttcctga 175  Q
    ||||||||| ||||||| |||||||    
T  29443246 ttttcaatgaggttccttttcctga 29443270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University