View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_low_1 (Length: 1282)

Name: NF3693_low_1
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_low_1
NF3693_low_1
[»] chr4 (8 HSPs)
chr4 (275-1266)||(49583343-49584330)
chr4 (25-274)||(49583037-49583286)
chr4 (624-788)||(49588989-49589153)
chr4 (142-267)||(5198998-5199124)
chr4 (150-234)||(4848615-4848699)
chr4 (197-274)||(15522606-15522683)
chr4 (96-165)||(29866154-29866223)
chr4 (328-361)||(49588574-49588607)
[»] chr5 (2 HSPs)
chr5 (88-209)||(37247603-37247723)
chr5 (118-161)||(27983524-27983567)
[»] chr2 (1 HSPs)
chr2 (88-165)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (143-234)||(7411339-7411429)
chr8 (138-206)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (136-211)||(6134221-6134296)
chr6 (140-200)||(2721839-2721899)
[»] chr1 (4 HSPs)
chr1 (95-215)||(26828549-26828669)
chr1 (84-156)||(34664919-34664991)
chr1 (187-255)||(35811949-35812017)
chr1 (225-274)||(16424901-16424950)


Alignment Details
Target: chr4 (Bit Score: 910; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 910; E-Value: 0
Query Start/End: Original strand, 275 - 1266
Target Start/End: Original strand, 49583343 - 49584330
Alignment:
Q  275 agagcaaactcaatttgccttaaaaccaactattgtatatatatgctccctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 374  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583343 agagcaaactcaattttccttaaaaccaactattgtaaatatatgctatctttaaatatatttaaatttttggacaggtgaatgcagctgaaccagatga 49583442  T
Q  375 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583443 acaatcacttccgtggtccattaaatatggtgtttttgatgatccggaaacatctgttgaggtgggtgaaatttaccaggctgaacttccaattttaatt 49583542  T
Q  475 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaatagcattacctatcccaataacttggataaaga 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49583543 tcaaagtctgagtatattttgttgcaaaataacaccgaggcagaaagtatacaccacaactttcaaataggattacctatcccaataacttggataaaga 49583642  T
Q  575 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583643 gttatgatattcgggaagaaacaaagattgggatgcatgaggagcatgaacataaagggcagattcttgttcctggctctcgaagtgacaactggactga 49583742  T
Q  675 aatcgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 774  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583743 aattgaagaggccggtttagtccttggtttatatatatttgggaagaacttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattg 49583842  T
Q  775 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattt 874  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49583843 tcattctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattt 49583942  T
Q  875 tcactgaatcaaggcaacgtgagcttttgtttcgtctgatgccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 974  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583943 tcactgaatcaaggcaacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttc 49584042  T
Q  975 aaagtttttcattttaatatcgattgttactccgtccactgtcatggattggatctatacttattgatttgtcttccatacttattatttgctatgttca 1074  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  49584043 aaagtttttcattttaatatcgattgttactccgtccattgtcatggattggatctatacttattgatttgtcttccatactta----ttgctatgttca 49584138  T
Q  1075 attgattggtaggtgtcagagacacttgcagaaaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttg 1174  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49584139 attgattggtaggtgtcagagacacttgcagagaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttg 49584238  T
Q  1175 atggattagcaatcggtaaaggnnnnnnngatcttatatgcccccatgttgatgatgtaaaatccaatgaagttgttctggtcggtccttca 1266  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49584239 atggattagcaatcggtaaaggaaaaaaagatcttatatgcccccatgttgatgatgtaaaatccaatgaagctgttctggtcggtccttca 49584330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 25 - 274
Target Start/End: Original strand, 49583037 - 49583286
Alignment:
Q  25 tatcatatccaagattttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 124  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583037 tatcatatccaaggttttaaataaaggtctcagtcaagtttgtggttgcgttaagatgtcgcaatttcgattgttacagatgttgcattgcgcattgtgg 49583136  T
Q  125 ttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 224  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583137 ttgtcgcagcgtgaattaatcacaacattgcataagtcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttct 49583236  T
Q  225 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583237 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 49583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 624 - 788
Target Start/End: Original strand, 49588989 - 49589153
Alignment:
Q  624 acataaagggcagattcttgttcctggctctcgaagtgacaactggactgaaatcgaagaggccggtttagtccttggtttatatatatttgggaagaac 723  Q
    |||||||||| |||||||||||| ||| ||| ||| ||| | ||||||||||||||||||||||  |||||||||||| || |||| |||||||||||||    
T  49588989 acataaagggaagattcttgttcatggttcttgaactgatacctggactgaaatcgaagaggccaatttagtccttggcttttatacatttgggaagaac 49589088  T
Q  724 ttcgttgaagtgaaaaaatttatcggcaataagaagatgaaggacatattgtcattctattatgg 788  Q
    |||||| |||||||||  |||||  |||||||||| |||||||| | | ||||||||||||||||    
T  49589089 ttcgttcaagtgaaaaggtttatacgcaataagaaaatgaaggataaactgtcattctattatgg 49589153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 142 - 267
Target Start/End: Original strand, 5198998 - 5199124
Alignment:
Q  142 aatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttca-tagtgtaa 240  Q
    ||||| ||||||||| || | |||| ||||||| ||||| |||| |||| ||||||||| |||||||||||||| ||||||| |||||||| || | |||    
T  5198998 aatcataacattgcacaaatattattaaaattatttatattatcatataatgtataataacttaatttctcattgtttcttcataatttcattactataa 5199097  T
Q  241 ttattttcataatttagtaatgaattt 267  Q
    || |||||||||||| |||||||||||    
T  5199098 ttcttttcataattttgtaatgaattt 5199124  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 4848699 - 4848615
Alignment:
Q  150 cattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 234  Q
    ||||||| || | |||| ||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||    
T  4848699 cattgcacaaatattattaaaattatttatactatcatataatgtataataacttaatttctcattgtttcttcataatttcata 4848615  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 274
Target Start/End: Original strand, 15522606 - 15522683
Alignment:
Q  197 aatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataatttagtaatgaatttatttctt 274  Q
    |||| |||||||||| ||| ||| ||| |||||| ||| ||||||||||||||| |||  ||||||||||| ||||||    
T  15522606 aataacttaatttcttattgtttattcataattttataatgtaattattttcattattatgtaatgaatttgtttctt 15522683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 29866223 - 29866154
Alignment:
Q  96 tgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 165  Q
    |||||| |||||||| || |  |||||||||||||  | |||||||||||||||||||||| || |||||    
T  29866223 tgttactgatgttgcgttacagattgtggttgtcgtggtgtgaattaatcacaacattgcacaaatctta 29866154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 49588574 - 49588607
Alignment:
Q  328 aaatatatttaaatttttggacaggtgaatgcag 361  Q
    |||||||||||||| |||||||||||||||||||    
T  49588574 aaatatatttaaatatttggacaggtgaatgcag 49588607  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 37247723 - 37247603
Alignment:
Q  88 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatctt 187  Q
    ||||||| |||||| |||||||| || |  |||||||||||||| | ||||||||||||||||| |||| || | ||||  |||| | |||| ||||| |    
T  37247723 atttcgagtgttacggatgttgcgttacagattgtggttgtcgcggtgtgaattaatcacaacaatgcacaaatattat-taaatcatttattctatcat 37247625  T
Q  188 atattgtataatagcttaattt 209  Q
    ||| ||||||||| ||||||||    
T  37247624 atagtgtataataacttaattt 37247603  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Original strand, 27983524 - 27983567
Alignment:
Q  118 attgtggttgtcgcagcgtgaattaatcacaacattgcataatt 161  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||    
T  27983524 attgtggtcgtcgcagggtgaattaatcacaacattgcacaatt 27983567  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 5430357 - 5430280
Alignment:
Q  88 atttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattctta 165  Q
    |||||| ||||||| ||||||||||| |  |||||||||||||| | ||||||||||||||| |||||| || |||||    
T  5430357 atttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtgaattaatcacaatattgcacaactctta 5430280  T

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Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 7411339 - 7411429
Alignment:
Q  143 atcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttctcattatttcttcttaatttcata 234  Q
    ||||||||||| || || |||||| ||||||| ||||  ||||||||| ||||||||| |||||||||| ||| |||||||||  |||||||    
T  7411339 atcacaacatttcacaaatcttattaaaattatttatgatatcttataatgtataataacttaatttct-attgtttcttcttcttttcata 7411429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 3424305 - 3424372
Alignment:
Q  138 aattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaa 206  Q
    |||||||||||||| |||| |||  |||||||||||| |||||||||| |||| ||||||||| |||||    
T  3424305 aattaatcacaacaatgcacaata-ttataaaaattatttatactatcatataatgtataataacttaa 3424372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 6134221 - 6134296
Alignment:
Q  136 tgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataatagcttaatttct 211  Q
    ||||||||||||||||||||| || |||||| ||||| | ||||||||||  ||| ||||||||| ||| ||||||    
T  6134221 tgaattaatcacaacattgcacaaatcttattaaaatcatttatactatcaaataatgtataataacttgatttct 6134296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 2721899 - 2721839
Alignment:
Q  140 ttaatcacaacattgcataattcttataaaaattaattatactatcttatattgtataata 200  Q
    ||||||||||| |||||||| | |||| ||||||| |||||||||| |||| |||||||||    
T  2721899 ttaatcacaaccttgcataaatattattaaaattatttatactatcatataatgtataata 2721839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 26828669 - 26828549
Alignment:
Q  95 ttgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgcataattcttataaaaattaattatactatcttatattgt 194  Q
    |||||| |||||||||||| |  |||||  ||||||| | || ||||||||||||||||||| || | |||| ||| ||| |||||||| | |||| |||    
T  26828669 ttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacattgcacaaattttattaaacttatttatactaacatataatgt 26828570  T
Q  195 ataatagcttaatttctcatt 215  Q
      || | ||||||||||||||    
T  26828569 gaaaaaacttaatttctcatt 26828549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 34664991 - 34664919
Alignment:
Q  84 cgcaatttcgattgttacagatgttgcattgcgcattgtggttgtcgcagcgtgaattaatcacaacattgca 156  Q
    |||||||||| ||||||| |||||||||||  | |||||||||||| | |  ||||||||| |||||||||||    
T  34664991 cgcaatttcggttgttacggatgttgcattatggattgtggttgtcacggtatgaattaattacaacattgca 34664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 35812017 - 35811949
Alignment:
Q  187 tatattgtataatagcttaatttctcattatttcttcttaatttcatagtgtaattattttcataattt 255  Q
    |||| ||||||||| |||||||||||| | ||||||||||||| |||| ||||||| |||  |||||||    
T  35812017 tataatgtataataacttaatttctcactgtttcttcttaattccataatgtaattctttcaataattt 35811949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 16424901 - 16424950
Alignment:
Q  225 taatttcatagtgtaattattttcataatttagtaatgaatttatttctt 274  Q
    |||||||||| || |||||||||| |||||| ||||||||||| ||||||    
T  16424901 taatttcataatgaaattattttcttaattttgtaatgaatttgtttctt 16424950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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