View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_10 (Length: 538)
Name: NF3693_low_10
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Original strand, 3411443 - 3411952
Alignment:
| Q |
19 |
tctttttcaaccgaattttgtccatatgtaagagttgtggtctgaactcaagtacttggctaatgaactcattgttagtgtctcaacaataattctacat |
118 |
Q |
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| T |
3411443 |
tctttttcaaccgaattttgtccatatgtaagagttgtggtatgaacccaaatacttggctaatgaacttattgtcagtgtttcatcaataattctacat |
3411542 |
T |
|
| Q |
119 |
aaccacaattggacatggatttaatatttgagaaatgttaa-ccgtgtcttcgagacacttgttaaggatactaaaaatgaaattaggtattttggagat |
217 |
Q |
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||||||||||||| ||||||||||||||| |||||||||| | || ||| | |||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
3411543 |
aaccacaattggatgtggatttaatatttgggaaatgttaatcggtatctccaggacacttgttaaggatactaaacatgaaattaggtactttggagat |
3411642 |
T |
|
| Q |
218 |
agtttaagaattgaccaatattactcatcataagtaaaag-tttatacttgagt-aaaaaatattaggtcaaaactttgaacaataac---tagtaatcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3411643 |
agtttaagaattgaccaatattactcatcataagtaaaagttttatacttgagtaaaaaaatattaggtcaaaactttgaacaataaccagtagtaatcc |
3411742 |
T |
|
| Q |
313 |
acaggtgatgcttctcctccatcttagcaattaccctaaatttaagctactcttgattttannnnnnnngacaaatccatacccttaatcccttataaac |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3411743 |
acaggtgatgcttctcctccatcttagcaattaccctaaatttaagctactcttgattttattttgtttgacaaatccatacccttaatcccttataaac |
3411842 |
T |
|
| Q |
413 |
cgttatattcgttgaccaaattttttctgatttccccttaatgaatctaaagattttcttcttttattgaaagttggtgaatctaaagtcattatgatca |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3411843 |
cgttatattcgttgaccaaattttttctgatttccccttaatgaatctaaagattttcttcttttattgaaagttggtgaaactaaagtcattatgatca |
3411942 |
T |
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| Q |
513 |
atttcttcat |
522 |
Q |
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|||||||||| |
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| T |
3411943 |
atttcttcat |
3411952 |
T |
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