View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3693_low_11 (Length: 516)

Name: NF3693_low_11
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3693_low_11
NF3693_low_11
[»] chr4 (3 HSPs)
chr4 (18-502)||(28391164-28391664)
chr4 (28-266)||(1543115-1543353)
chr4 (187-270)||(16940836-16940919)
[»] chr8 (3 HSPs)
chr8 (18-502)||(32526768-32527268)
chr8 (186-269)||(43443336-43443419)
chr8 (148-266)||(18012979-18013097)
[»] chr1 (6 HSPs)
chr1 (18-502)||(6837311-6837811)
chr1 (18-485)||(8975872-8976350)
chr1 (47-422)||(6385934-6386308)
chr1 (28-266)||(26402748-26402986)
chr1 (423-502)||(6385838-6385917)
chr1 (436-481)||(28599553-28599598)
[»] chr3 (1 HSPs)
chr3 (40-339)||(2803712-2804014)
[»] chr5 (3 HSPs)
chr5 (18-423)||(20081862-20082252)
chr5 (28-266)||(17795237-17795475)
chr5 (235-284)||(20332439-20332488)
[»] chr2 (2 HSPs)
chr2 (300-487)||(13812830-13813012)
chr2 (18-144)||(43371732-43371858)
[»] chr6 (2 HSPs)
chr6 (28-266)||(7035819-7036057)
chr6 (148-269)||(26255801-26255922)
[»] chr7 (5 HSPs)
chr7 (148-269)||(35968006-35968127)
chr7 (148-269)||(35989418-35989539)
chr7 (148-269)||(43584652-43584773)
chr7 (148-269)||(8987767-8987888)
chr7 (235-284)||(35940954-35941003)


Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 28391664 - 28391164
Alignment:
Q  18 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28391664 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggagggtttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 28391565  T
Q  118 gtaggaagcctattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28391564 gtaggaagcctattttgcaaataaacagcagtgtttgccgattccgctcaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 28391465  T
Q  218 atataaatctgtttattctttcactaactccattttgttgtggagtgtatggaacagtcaattgatgatgaatgtcagcgtcatcacagaatcgatcaaa 317  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||    
T  28391464 atataaatttgtttcttctttcactaactccattttgttgtgaagtgtatggaacagtcaattgatgatgaatgccaacgtcatcacataatcgatcaaa 28391365  T
Q  318 tgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccattttcattctccactcttgctttgaatttccaaaatacttgt 417  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  28391364 tgcttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaatttccgaaatacttgt 28391265  T
Q  418 gcta----------------cagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattgaaagaagatgttc 501  Q
    ||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28391264 gctacctctgacttgtgcttcagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattcaaagaagatgttc 28391165  T
Q  502 t 502  Q
    |    
T  28391164 t 28391164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 1543353 - 1543115
Alignment:
Q  28 aagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctcttgtaggaagcc 127  Q
    ||||||||||| ||||||| |||||| || || |  || | ||| || ||||||||||| |||||||| |||| || |||||||||  |||| |||||||    
T  1543353 aagcacaaacaaccaaatactttaagaaagtttaaagaaggtttgtatccataccaagcttcaaatggtgtctgattctttactgcagttgtgggaagcc 1543254  T
Q  128 tattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatct 227  Q
    | ||||| | | |||| |  || ||||||| |||  |||| || |  ||||| |||||||||||||||| ||| |||| ||||||||||| |||  ||||    
T  1543253 tgttttgaagaaaaactgatgtatttgccgcttcagcccagaacttttttggtaagttcttctcatgcaacatgcatctggtcatctccattatgtatct 1543154  T
Q  228 gtttattctttcactaactccattttgttgtggagtgta 266  Q
     ||| |||||||||||||||||||||| |||||||||||    
T  1543153 atttcttctttcactaactccattttgctgtggagtgta 1543115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 16940919 - 16940836
Alignment:
Q  187 ttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactccattttgttgtggagtgtatgga 270  Q
    |||||||| |||||| |||  | |||||||| || | |||| ||| | ||||||||||||||||||||||||||||| ||||||    
T  16940919 ttctcatgtagcatatatctagccatctccattacatatctatttctcctttcactaactccattttgttgtggagtatatgga 16940836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 32527268 - 32526768
Alignment:
Q  18 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527268 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggagggtttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 32527169  T
Q  118 gtaggaagcctattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32527168 gtaggaagcctattttgcaaataaacagcagtgtttgccgattccgctcaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 32527069  T
Q  218 atataaatctgtttattctttcactaactccattttgttgtggagtgtatggaacagtcaattgatgatgaatgtcagcgtcatcacagaatcgatcaaa 317  Q
    |||||| | ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||    
T  32527068 atataattttgtttcttctttcactaactccattttgttgtgtagtgtatggaacagtcaattgatgatgaatgccatcgtcatcacataatcgatcaaa 32526969  T
Q  318 tgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccattttcattctccactcttgctttgaatttccaaaatacttgt 417  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  32526968 tgcttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaatttcctaaatacttgt 32526869  T
Q  418 gcta----------------cagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattgaaagaagatgttc 501  Q
    ||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32526868 gctacctctgacttgtgcttcagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattcaaagaagatgttc 32526769  T
Q  502 t 502  Q
    |    
T  32526768 t 32526768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 269
Target Start/End: Complemental strand, 43443419 - 43443336
Alignment:
Q  186 cttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactccattttgttgtggagtgtatgg 269  Q
    ||||||||||| ||||||||  | |||||||| || | |||| ||| | |||||||||||||||||||||||||| || |||||    
T  43443419 cttctcatgcaacatacatctagccatctccattacatatctatttctcctttcactaactccattttgttgtggcgtatatgg 43443336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 18013097 - 18012979
Alignment:
Q  148 gtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactc 247  Q
    |||||||||| |||  |||||||||| || ||||| | |||||||||||  |||||||  | |||||||| ||   |||| ||| | |||||||||||||    
T  18013097 gtgtttgccgcttctgcccaaaattgtttaggcaattccttctcatgcaaaatacatctagccatctccattactgatctatttctcctttcactaactc 18012998  T
Q  248 cattttgttgtggagtgta 266  Q
    |||||||||  ||||||||    
T  18012997 cattttgttcgggagtgta 18012979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 6837311 - 6837811
Alignment:
Q  18 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  6837311 aacatgagtaaagcacagacatccaaatattttaaggaaattcagggagggtttataaccataccaagcctcaaatggtgtcttatcctttattgctctt 6837410  T
Q  118 gtaggaagcctattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 217  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6837411 gtaggaagcctattttgcaaataaacagcagtgtttgtcgattccgcccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 6837510  T
Q  218 atataaatctgtttattctttcactaactccattttgttgtggagtgtatggaacagtcaattgatgatgaatgtcagcgtcatcacagaatcgatcaaa 317  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  6837511 atataaatccgtttcttctttcactaactcaattttgttgtggagtgtatggaacaatcaattgatgattaatgccagcgtcatcacagaatcgatcaaa 6837610  T
Q  318 tgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccattttcattctccactcttgctttgaatttccaaaat------ 411  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          
T  6837611 tgcttcagaagtatactctttgtcattgtctgatctgagagcttgaattttacaaccactttcattctccactcttgctttgaatttccaaaatacttgt 6837710  T
Q  412 ----------acttgtgctacagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattgaaagaagatgttc 501  Q
              ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||||||||    
T  6837711 gccacctctgacttgtgcttcagaaagaaaatccaacacatacaggtaaaatcatcaatgaatatagcataataaagactgtcattcaaagaagatgttc 6837810  T
Q  502 t 502  Q
    |    
T  6837811 t 6837811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 8975872 - 8976350
Alignment:
Q  18 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 117  Q
    |||||| ||||| || |||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||  || |||||||||||| |||||    
T  8975872 aacatgggtaaatcaaaaacatccaaatattttaagaaaatttagggagggtttttaaccataccaagcctcaaatgatgttttatcctttactactctt 8975971  T
Q  118 gtaggaagcctattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 217  Q
    ||| ||||||||||||| ||||||||  || ||||||| |||||| ||||||| || ||  |||||||||||||||||| |||||||| |||||||| ||    
T  8975972 gtaagaagcctattttgtaaataaactacaatgtttgctgattccgcccaaaactggttgagcaagttcttctcatgcaacatacatc-ggtcatcttca 8976070  T
Q  218 atataaatctgtttattctttcactaactccattttgttgtggagtgtatggaacagtcaattgatgatgaatgtcagcgtcatcacagaatcgatcaaa 317  Q
    |||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||| ||| || | |||||||||||||||||||| ||| |||||||||||    
T  8976071 atataaatatgtttcttctttcactaactcgattttattgtggagtgtatggaatagttaactaatgatgaatgtcagcgtcattacataatcgatcaaa 8976170  T
Q  318 tgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccattttcattctccactcttgctttgaatttccaaaatacttg- 416  Q
    || |    ||| ||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||     
T  8976171 tgct----aagcatactcttttccattgtttgatatgagagcttgaattttacaaccactttcattctccactcttgctttgaagttccataatacttgt 8976266  T
Q  417 ---------------tgctacagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactacca 485  Q
                   |||| ||||||||| || ||||||||||| |||| ||||||||||| ||||||||||| ||||||||||    
T  8976267 gttacctcttacttttgcttcagaaagaagatacaacacatacgagtaatatcatcaatgagtatagcataatgaagactacca 8976350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 47 - 422
Target Start/End: Complemental strand, 6386308 - 6385934
Alignment:
Q  47 ttttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctcttgtaggaagcctattttgcaaataaacagc 146  Q
    ||||||||||||| ||||||| ||| ||| ||||||  ||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||| |    
T  6386308 ttttaaggaaatttagggagggtttgtaatcataccgggcctcaaatggtgtcatatcatttattgctcttgtaggaagcctattttgcaaataaacaac 6386209  T
Q  147 agtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaact 246  Q
     ||||| ||||||||  ||||||||| ||| | |||||||||  |||| | ||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  6386208 -gtgttcgccgattctgcccaaaatttcttggtcaagttcttaccatgtaacatacattgggtcatctccaatataaatttgtttcttctttcactaact 6386110  T
Q  247 ccattttgttgtggagtgtatggaacagtcaattgatgatgaatgtcagcgtcatcacagaatcgatcaaatgtttcagaagtatactctttgccattgt 346  Q
    | ||| ||||||||| ||||| |||| ||| | |||||||||||   | | |||||||| ||||||||||||| ||||||| |||||| |||||| || |    
T  6386109 ctattatgttgtggaatgtattgaaccgtccaatgatgatgaattctaacttcatcacaaaatcgatcaaatgcttcagaa-tatactatttgccgttat 6386011  T
Q  347 ctgatctgagagcttgaattttacaaccattttcattctccactcttg-ctttgaatttccaaaatacttgtgctac 422  Q
    | ||||| |||| |||||| ||||||||||  |||||||||||||  |  |||||||| | ||||||||||||||||    
T  6386010 cagatctaagagtttgaatgttacaaccatcctcattctccactccagattttgaattgctaaaatacttgtgctac 6385934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 26402986 - 26402748
Alignment:
Q  28 aagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctcttgtaggaagcc 127  Q
    ||||||||||| ||||||| |||||| || || |  || | ||| || ||||||||||| |||||||| |||| || |||||||||  |||| |||||||    
T  26402986 aagcacaaacaaccaaatactttaagaaagtttaaagaaggtttgtatccataccaagcttcaaatggtgtctgattctttactgcagttgtgggaagcc 26402887  T
Q  128 tattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatct 227  Q
    | ||||| | | |||| |  || ||||||| |||  |||| || |  ||||| |||||||||||||||| ||| |||| ||||||||||| |||  ||||    
T  26402886 tgttttgaagaaaaactgatgtatttgccgcttcagcccagaacttttttggtaagttcttctcatgcaacatgcatctggtcatctccattatgtatct 26402787  T
Q  228 gtttattctttcactaactccattttgttgtggagtgta 266  Q
     ||| |||||||||||||||||||||| |||||||||||    
T  26402786 atttcttctttcactaactccattttgctgtggagtgta 26402748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 6385917 - 6385838
Alignment:
Q  423 agaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccattgaaagaagatgttct 502  Q
    |||||||| |||||||||||||   |||||||||||||| ||||| |||||||| ||||| |||  ||||||| ||||||    
T  6385917 agaaagaagatccaacacatacaactaaaatcatcaatgcatataacataataatgactatcatgcaaagaaggtgttct 6385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 481
Target Start/End: Original strand, 28599553 - 28599598
Alignment:
Q  436 aacacatacgggtaaaatcatcaatgaatatagcataataaagact 481  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||||    
T  28599553 aacacatacgagtaaaatcaacaatgaatatagtataataaagact 28599598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 40 - 339
Target Start/End: Complemental strand, 2804014 - 2803712
Alignment:
Q  40 ccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctcttgtaggaagcctattttgcaaat 139  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| | ||    
T  2804014 ccaaatattttaaggaaattcaaggagggtttgtaaccataccaagtctcgaatgacgtcttatcctttactgctcttgtaggaagcctattttgtagat 2803915  T
Q  140 aaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctca----tgcagcatacatcgggtcatctccaatataaatctgtttattc 235  Q
    ||||| ||||  | ||||||||| ||||||||| ||| |||||||||||||||    |||| ||||||||||||||| |||||||||||| ||| | |||    
T  2803914 aaacaacagttatcgccgattccgcccaaaattacttgggcaagttcttctcatgcatgcaacatacatcgggtcatatccaatataaatatgtctcttc 2803815  T
Q  236 tttcactaactccattttgttgtggagtgtatggaacagtcaattgatgatgaatgtcagcgtcatcacagaatcgatcaaatgtttcagaagtatactc 335  Q
    |||||||||||||||||||||||||||||||| ||||  |||| | || |||||||  | | |||||||| ||| |||| |||| |||||||||||||||    
T  2803814 tttcactaactccattttgttgtggagtgtat-gaacgatcaactaataatgaatgcaaacatcatcacaaaattgatctaatgcttcagaagtatactc 2803716  T
Q  336 tttg 339  Q
    ||||    
T  2803715 tttg 2803712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 20081862 - 20082252
Alignment:
Q  18 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 117  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||| |          || || | ||    
T  20081862 aacatgagtaaagcccaagcatccaaatattttaaggaaattaagggagggtttgtagccataccaagcctcaaatgggga---------taatgttatt 20081952  T
Q  118 gtaggaagcctattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctcca 217  Q
    |||||||||||||||| |||||||||| || | ||  |  |||||||||| |||||| | ||||||||||||||||||| |||||||||| |||||||||    
T  20081953 gtaggaagcctatttttcaaataaacaacaattttcactaattccacccacaattgcatgggcaagttcttctcatgcatcatacatcggttcatctcca 20082052  T
Q  218 atataaatctgtttattctttcactaactccattttgttgtggagtgtatggaacagtcaattgatgatgaatgtcagcgtcatcacagaatcgatcaaa 317  Q
    |||||||||| ||| |||||| ||||  |  |||||||| |||| |||||||||||   | ||||| ||||||||||| ||||||||| |||||||| ||    
T  20082053 atataaatctatttcttcttttactatttatattttgttctggattgtatggaacatatagttgataatgaatgtcagtgtcatcacataatcgatccaa 20082152  T
Q  318 tgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccattttcattctccactcttgctttgaatttccaaaatacttgt 417  Q
    || ||||||||||| |||||| | ||||||||||  ||||| |||| ||||||||||| |||| ||||      || ||||||| |||||||||||||||    
T  20082153 tgcttcagaagtattctcttttctattgtctgatacgagagtttgacttttacaaccactttctttct------tttctttgaagttccaaaatacttgt 20082246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 17795475 - 17795237
Alignment:
Q  28 aagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctcttgtaggaagcc 127  Q
    ||||||||||| ||||||| |||||| || || |  || | ||| || |||||||||||||||||||| |||| || |||||||||  |||| |||||||    
T  17795475 aagcacaaacaaccaaatactttaagaaagtttaaagaaggtttgtatccataccaagcctcaaatggtgtctgattctttactgcagttgtgggaagcc 17795376  T
Q  128 tattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatct 227  Q
    | ||||| | | |||| |  || ||||||| |||  |||| || |  ||||| |||||||||||||||| ||| |||| ||||||||||| |||  ||||    
T  17795375 tgttttgaagaaaaactgatgtatttgccgcttcagcccagaacttttttggtaagttcttctcatgcaacatgcatctggtcatctccattatgtatct 17795276  T
Q  228 gtttattctttcactaactccattttgttgtggagtgta 266  Q
     ||| ||||||||||||||||||||||||||||||||||    
T  17795275 atttcttctttcactaactccattttgttgtggagtgta 17795237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 20332439 - 20332488
Alignment:
Q  235 ctttcactaactccattttgttgtggagtgtatggaacagtcaattgatg 284  Q
    |||||||| |||||||||||||| |||||||| ||| ||||||| |||||    
T  20332439 ctttcactcactccattttgttgaggagtgtaaggagcagtcaactgatg 20332488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 300 - 487
Target Start/End: Complemental strand, 13813012 - 13812830
Alignment:
Q  300 atcacagaatcgatcaaatgtttcagaagtatactctttgccattgtctgatctgagagcttgaattttacaaccattttcattctccactcttgctttg 399  Q
    ||||||||||||||| |||| || ||||||||||| ||| |||||||||||||| ||||||||||||||| ||||| |   | |||||||||| ||||||    
T  13813012 atcacagaatcgatcgaatgctttagaagtatacttttttccattgtctgatctaagagcttgaattttaaaaccactcctactctccactctagctttg 13812913  T
Q  400 aatttccaaaatacttgtgctacagaaagaaaatccaacacatacgggtaaaatcatcaatgaatatagcataataaagactaccatt 487  Q
    || ||||||||||||||||||  |||||| || ||||||||||||  ||||||||||||||||||||    |||||||||||||||||    
T  13812912 aagttccaaaatacttgtgctttagaaag-aattccaacacatactagtaaaatcatcaatgaatat----taataaagactaccatt 13812830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 43371858 - 43371732
Alignment:
Q  18 aacatgagtaaagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctctt 117  Q
    ||||||| || | |||||| || ||||||||||||||||||  ||||||| ||| |||||||| ||| ||||||||| ||||||||||||||||| ||||    
T  43371858 aacatgaatacaacacaaaaattcaaatattttaaggaaatcaagggagggtttgtaaccatatcaaacctcaaatgacgtcttatcctttactgttctt 43371759  T
Q  118 gtaggaagcctattttgcaaataaaca 144  Q
    |||||||| ||||||| ||| ||||||    
T  43371758 gtaggaagtctattttacaattaaaca 43371732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 7036057 - 7035819
Alignment:
Q  28 aagcacaaacatccaaatattttaaggaaattcagggaggatttataaccataccaagcctcaaatggcgtcttatcctttactgctcttgtaggaagcc 127  Q
    ||||||||||| ||||||| |||||| || || |  || | ||| || ||||||||||| |||||||| |||| || |||||||||  |||| |||||||    
T  7036057 aagcacaaacaaccaaatactttaagaaagtttaaagaaggtttgtatccataccaagcttcaaatggtgtctgattctttactgcagttgtgggaagcc 7035958  T
Q  128 tattttgcaaataaacagcagtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatct 227  Q
    | ||||| | | |||| |  || ||||||| |||  |||| || |  ||||| |||||||||||||||| ||| |||| ||||||||||| |||  ||||    
T  7035957 tgttttgaagaaaaactgatgtatttgccgcttcagcccagaacttttttggtaagttcttctcatgcaacatgcatctggtcatctccattatgtatct 7035858  T
Q  228 gtttattctttcactaactccattttgttgtggagtgta 266  Q
     ||| |||||||||||||||||||||| |||||||||||    
T  7035857 atttcttctttcactaactccattttgctgtggagtgta 7035819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 26255922 - 26255801
Alignment:
Q  148 gtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactc 247  Q
    |||||||||| |||  ||||||| || || ||||  | ||||||||||| ||||||||  | |||||||| || | |||| ||| | |||||||||||||    
T  26255922 gtgtttgccgcttctgcccaaaaatgtttaggcatctccttctcatgcaacatacatctagccatctccattacatatctatttctcctttcactaactc 26255823  T
Q  248 cattttgttgtggagtgtatgg 269  Q
    ||||||||||||| || |||||    
T  26255822 cattttgttgtggcgtatatgg 26255801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 35968006 - 35968127
Alignment:
Q  148 gtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactc 247  Q
    |||||||||| |||  ||||||| || || ||||  | ||||||||||| ||||||||  | |||||||| || | |||| ||| | |||||||||||||    
T  35968006 gtgtttgccgcttctgcccaaaaatgtttaggcatctccttctcatgcaacatacatctagccatctccattacatatctatttctcctttcactaactc 35968105  T
Q  248 cattttgttgtggagtgtatgg 269  Q
    ||||||||||||| || |||||    
T  35968106 cattttgttgtggcgtatatgg 35968127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 35989418 - 35989539
Alignment:
Q  148 gtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactc 247  Q
    |||||||||| |||  ||||||| || || ||||  | ||||||||||| ||||||||  | |||||||| || | |||| ||| | |||||||||||||    
T  35989418 gtgtttgccgcttctgcccaaaaatgtttaggcatctccttctcatgcaacatacatctagccatctccattacatatctatttctcctttcactaactc 35989517  T
Q  248 cattttgttgtggagtgtatgg 269  Q
    ||||||||||||| || |||||    
T  35989518 cattttgttgtggcgtatatgg 35989539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 43584773 - 43584652
Alignment:
Q  148 gtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactc 247  Q
    |||||||||| |||  ||||||| || || ||||  | ||||||||||| ||||||||  | |||||||| || | |||| ||| | |||||||||||||    
T  43584773 gtgtttgccgcttctgcccaaaaatgtttaggcatctccttctcatgcaacatacatctagccatctccattacatatctatttctcctttcactaactc 43584674  T
Q  248 cattttgttgtggagtgtatgg 269  Q
    ||||||||||||| || |||||    
T  43584673 cattttgttgtggcgtatatgg 43584652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 269
Target Start/End: Complemental strand, 8987888 - 8987767
Alignment:
Q  148 gtgtttgccgattccacccaaaattgctttggcaagttcttctcatgcagcatacatcgggtcatctccaatataaatctgtttattctttcactaactc 247  Q
    |||||||||| |||  ||||||| || || ||||  | ||||||||||| ||||||||  | |||||||| || | |||| ||| | ||||| |||||||    
T  8987888 gtgtttgccgcttctgcccaaaaatgtttaggcatctccttctcatgcaacatacatctagccatctccattacatatctatttctcctttcgctaactc 8987789  T
Q  248 cattttgttgtggagtgtatgg 269  Q
    ||||||||| ||| || |||||    
T  8987788 cattttgttttggcgtatatgg 8987767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 35941003 - 35940954
Alignment:
Q  235 ctttcactaactccattttgttgtggagtgtatggaacagtcaattgatg 284  Q
    |||||||| |||||||||||||| |||||||| ||| ||||||| |||||    
T  35941003 ctttcactcactccattttgttgaggagtgtaaggagcagtcaactgatg 35940954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University