View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_13 (Length: 466)
Name: NF3693_low_13
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 278460 - 278010
Alignment:
| Q |
1 |
aggaccaattctaagcactacataaagcccttgttcttgagcaatttttagaaacttgatgaaatctagatttctagaaaaatcatatttgcgacgaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
278460 |
aggaccaattctaagcactacataaagcccttgttcttgagcaatttttagaaacttgatgaaatctagatttccagaaaaatcatatttgcgacgaaca |
278361 |
T |
|
| Q |
101 |
ggttcgtgaaggtcccaaaatatataggtttcaatggcatcaagatcaccatcttttgctttcattataagatctggccacatttgtgaagtgctgcgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278360 |
ggttcgtgaaggtcccaaaatatataggtttcaatggcatcaagatcaccatcttttgctttcattataagatctggccacatttgtgaagtgctgcgtg |
278261 |
T |
|
| Q |
201 |
ggtagtgaattgcaccagaaattattagttttcgttctccattaataataattgcacttgaatcatattcaacagttgttgctgatgaacaagtgtacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278260 |
ggtagtgaattgcaccagaaattattagttttcgttctccattaagaataattgcacttgaatcatattcaacagttgttgctgatgaacaagtgtacaa |
278161 |
T |
|
| Q |
301 |
caatgctaagcatgcaataagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278160 |
caatgctaagcatgcaataagaaatgtcccaaacatagcattagacatattttcttaccatgcaataagaaattttcaaatcctaggatttgatatatca |
278061 |
T |
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| Q |
401 |
atctatggtcaatgtacaagtttttctaggcacaatttcatgcttgggttt |
451 |
Q |
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| T |
278060 |
atctatggtcaatgtacaagtttttctaggcacaatttcatccttgggttt |
278010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 289854 - 289759
Alignment:
| Q |
285 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaa |
380 |
Q |
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|||||||||| ||||||||||||| |||||| |||||||| | | |||| | |||||| ||||||||| | ||||||||||||| ||| |||| |
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| T |
289854 |
atgaacaagtacacaacaatgctaaacatgcagtaagaaatatactaaaccttggattagacatatttttcaaacatgcaataagaagtttccaaa |
289759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 451
Target Start/End: Complemental strand, 24531581 - 24531415
Alignment:
| Q |
285 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaatcct |
384 |
Q |
| |
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|||||||||| |||| |||||||| |||||| |||||||||| | |||| |||||||| ||||||||| | ||||||||||||||||| |||| | | |
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| T |
24531581 |
atgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatttttcaaacatgcaataagaaatttccaaaccat |
24531482 |
T |
|
| Q |
385 |
aggatttgatatatcaatctatggtcaatgtacaag-tttttctaggcacaatttcatgcttgggttt |
451 |
Q |
| |
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| T |
24531481 |
atgattgaatgaatc-atctagggtcaatgtacaagttttttataggcacaatttcatacatgggttt |
24531415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 380
Target Start/End: Complemental strand, 24524908 - 24524813
Alignment:
| Q |
285 |
atgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacataggattatacatattttcttaccatgcaataagaaattttcaaa |
380 |
Q |
| |
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|||||||||| |||| |||||||| |||||| |||||||||| | |||| |||||||| ||||||||| | ||||||||||||||||| |||| |
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| T |
24524908 |
atgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatttttcaaacatgcaataagaaatttccaaa |
24524813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 10544544 - 10544468
Alignment:
| Q |
80 |
aaatcatatttgcgacgaacgggttcgtgaaggtcccaaaatatataggtttcaatggcatcaagatcaccatcttt |
156 |
Q |
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| T |
10544544 |
aaattatatctgccacgaacctgttcgtgacgatcccaaaatatgtaagtttcaatggcatcaagaccaccatcttt |
10544468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 156
Target Start/End: Complemental strand, 9642598 - 9642522
Alignment:
| Q |
80 |
aaatcatatttgcgacgaacgggttcgtgaaggtcccaaaatatataggtttcaatggcatcaagatcaccatcttt |
156 |
Q |
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|||| ||||| ||| | ||||||||| ||| | ||||||||||| || |||||||||||||| || |||||||||| |
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| T |
9642598 |
aaattatattcgcgcctaacgggttcatgacgatcccaaaatatgtaagtttcaatggcatctaggccaccatcttt |
9642522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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