View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3693_low_15 (Length: 462)
Name: NF3693_low_15
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_15 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
| [»] scaffold1089 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Original strand, 24005516 - 24005962
Alignment:
| Q |
16 |
gaagcatgcaaattttgtagaataggacaagctttaagaagtttcatgaaattattccgagtttcaaaacaaacatatcttagatgtagggttttgagat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24005516 |
gaagcatgcaaattttgtagaataggacaagctttaagaagtttactgaaattattctgagtttcaaaagaaacatatcttagatgtagggttttgagat |
24005615 |
T |
|
| Q |
116 |
ttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaatcgtgagattcttcaatgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24005616 |
ttggaagatcaacacacaaattttcaccttcaacttttaagctcgcaagtttgacaacaactagggttctggaggtgaaaatcgtgagattcttcaatgt |
24005715 |
T |
|
| Q |
216 |
tacattatcgaggaggagatgcagttcctcgacgcggcgttgttttatggcttctacccatgcatggaagctttgatgatcaactttataaaattgagag |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
24005716 |
tacattatcgaggaggagatgaagttcctcgacgcggcgtagttttatggcttctacccatgcatagaagctttgatgatcaaccttataaaatcgagag |
24005815 |
T |
|
| Q |
316 |
agtttgaggtgaaacgttttgataggttggttggccgcagaaggaaagagcatgagtttatctacaaaaccacagaagcgattgaagccttcagcgtctt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |
|
|
| T |
24005816 |
agtttgaggtgaaacgttttgataggttggttggtcgcagaaggaaagagcatgagtttatctacaaaaccacagaagcgattgaagctatcaacgtttt |
24005915 |
T |
|
| Q |
416 |
tcacggtatcatcgtcgaaacaaagagctgtgagtgagtaacataat |
462 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24005916 |
tcacggtatcatcgtcgaaacgaagagctgtgagtgagtaacataat |
24005962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 32 - 455
Target Start/End: Original strand, 23940703 - 23941123
Alignment:
| Q |
32 |
gtagaataggacaagctttaagaagtttcatgaaattattccgagtttcaaaacaaacatatcttagatgtagggttttgagatttggaagatcaacaca |
131 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| ||||||| | | ||||| ||||| | | |||||| ||||||||| ||||||||||||||| |
|
|
| T |
23940703 |
gtagaattggacaagcattaagaagtttcatgaaatcattccgattgtgaaaactaacatgacccaaatgtagagttttgagagatggaagatcaacaca |
23940802 |
T |
|
| Q |
132 |
caaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaatcgtgagattcttcaatgttacattatcgaggagg |
231 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||| | ||||||||||| ||||| | ||||| ||| | || |||||||| | || |||| | |
|
|
| T |
23940803 |
caaattatcagtttcaacttttaatctctcaagtttgagatcaactagggttttggagataaaaattgtggtactc---aatgttacgtcattgagggtg |
23940899 |
T |
|
| Q |
232 |
agatgcagttcctcgacgcggcgttgttttatggcttctacccatgcatggaagctttgatgatcaactttataaaattgagagagtttgaggtgaaacg |
331 |
Q |
| |
|
||||| | | |||||| |||| ||||| |||||||||||||||| |||||||||| ||||||||| |||| | ||||||| ||| |||||||| |
|
|
| T |
23940900 |
agatgaaacttctcgacctggcgatgtttggcagcttctacccatgcatcgaagctttgacgatcaacttcataacctcgagagaggatgaagtgaaacg |
23940999 |
T |
|
| Q |
332 |
ttttgataggttggttggccgcagaaggaaagagcatgagtttatctacaaaaccacagaagcgattgaagccttcagcgtctttcacggtatcatcgtc |
431 |
Q |
| |
|
||||||| |||||||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| |||||| ||| |
|
|
| T |
23941000 |
ttttgatgggttggttggtcgcagaaggagagagcatgagcttatctacaaaacgacagaagcgattgaagctgtcagcatctttcactgtatcaccgtt |
23941099 |
T |
|
| Q |
432 |
gaaacaaagagctgtgagtgagta |
455 |
Q |
| |
|
||| | |||||||||||||||||| |
|
|
| T |
23941100 |
gaagcgaagagctgtgagtgagta |
23941123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 24112323 - 24112147
Alignment:
| Q |
21 |
atgcaaattttgtagaataggacaagctttaagaagtttcatgaaattattccgagtttcaaaacaaacatatcttagatgtagggttttgagatttgga |
120 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| || ||||||| |||| || ||||| ||||||||||| | | | |||| |||||||| |||| |
|
|
| T |
24112323 |
atgcaaatcttgtagaataggacaagcattaagaagcttaatgaaatcattctgattttcacaacaaacatatttcaaacctaggattttgagagatgga |
24112224 |
T |
|
| Q |
121 |
agatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaat |
197 |
Q |
| |
|
||||||||| | ||||| | | |||||| | ||||| ||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
24112223 |
agatcaacatagaaattataattttcaacatgtaaccactcaagtttgagaacaaatagggtttgagaggtgaaaat |
24112147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 25613753 - 25613658
Alignment:
| Q |
102 |
tagggttttgagatttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaat |
197 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
25613753 |
taggattttgagagatggaagatcaacacacaaattttcagctttaactactaatctctcaagtttcagaacaactagggttttggaggtgaaaat |
25613658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 31261916 - 31261808
Alignment:
| Q |
99 |
atgtagggttttgagatttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaatc |
198 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||||| | || |||||||||| |||||| ||||| |
|
|
| T |
31261916 |
atgtaggattttgagagatggaagatcaacacacaaattttcagctttaactactaatctctcaagtttcagaataactagggtttgggaggttaaaatt |
31261817 |
T |
|
| Q |
199 |
gtgagattc |
207 |
Q |
| |
|
||| ||||| |
|
|
| T |
31261816 |
gtgggattc |
31261808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 32430126 - 32430221
Alignment:
| Q |
102 |
tagggttttgagatttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaat |
197 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| ||| || ||| |||||| ||| |||||||| || ||| |||||||||||||||||||| |
|
|
| T |
32430126 |
tagggttttgagcgatggaagatcaaaacacaaattatcagctacaatttttaagttctgaagtttgagaataacaagggttctggaggtgaaaat |
32430221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 14308019 - 14307935
Alignment:
| Q |
99 |
atgtagggttttgagatttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggtt |
183 |
Q |
| |
|
|||||||||||| || | ||||||||||||||| ||| |||| | ||||| || |||||||||||||| |||||| |||||| |
|
|
| T |
14308019 |
atgtagggttttaagctatggaagatcaacacaaaaacgatcacttgcaactcgtaccctctcaagtttgagaacaacaagggtt |
14307935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 32430042 - 32430082
Alignment:
| Q |
21 |
atgcaaattttgtagaataggacaagctttaagaagtttca |
61 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
32430042 |
atgcaaatcttctagaataggacaagcattaagaagtttca |
32430082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 43694075 - 43694248
Alignment:
| Q |
16 |
gaagcatgcaaattttgtagaataggacaagctttaagaagtttcatgaaattattccgagtttcaaaacaaacatatcttagatgtagggttttgagat |
115 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||||||| ||||||| |||| | ||| ||||| |||||| | | ||||||||||||||| | |
|
|
| T |
43694075 |
gaagcatgcaaatcttgtagaagtggacaagcattaagaagttttatgaaatcattcttatttttaaaactaacatagttgaaatgtagggttttgagct |
43694174 |
T |
|
| Q |
116 |
ttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggag |
189 |
Q |
| |
|
||||||||||||||||||||| ||| || || ||||||| ||||||||| | || ||||||||||| |||| |
|
|
| T |
43694175 |
atggaagatcaacacacaaattatcagattgaatttttaactgctcaagtttcagaataactagggttcgggag |
43694248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 43685018 - 43685139
Alignment:
| Q |
16 |
gaagcatgcaaattttgtagaataggacaagctttaagaagtttcatgaaattattccgagtttcaaaacaaacatatcttagatgtagggttttgagat |
115 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||| ||||||||||||| ||||| |||| | ||| ||||| ||| ||| | | ||||||||||||||| |
|
|
| T |
43685018 |
gaagcatccaaatcttgtacaataggacaagcattaagaagtttcaagaaatcattcttatttttaaaactaacgtatttgaaatgtagggttttgagcg |
43685117 |
T |
|
| Q |
116 |
ttggaagatcaacacacaaatt |
137 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
43685118 |
atggaagattaacacacaaatt |
43685139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 15498233 - 15498040
Alignment:
| Q |
21 |
atgcaaattttgtagaataggacaagctttaagaagtttcatgaaattattccgagtttcaaaacaaacatatcttagatgtagggttttgagatttg-- |
118 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||| || ||| | ||||||||| ||| || | | || ||||||||||| |||| |
|
|
| T |
15498233 |
atgcaaatcttgtagattaggacaagcattaagaagtttcatgacatcattatgcttttcaaaacggacaaatttcaaatatagggttttgacttttgag |
15498134 |
T |
|
| Q |
119 |
-----gaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaatcgtgagattc |
207 |
Q |
| |
|
|||||| |||||||||||||||| |||||| || ||||||| || |||||| |||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
15498133 |
agatggaagatgaacacacaaattttcagcttcaagttgtaacctcgcatgtttgagaacaactagggtatgagaggtgaaaattgtgggattc |
15498040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 37997263 - 37997343
Alignment:
| Q |
117 |
tggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggttctggaggtgaaaat |
197 |
Q |
| |
|
||||||||||||||||||| | ||| | |||| |||||||| | |||||||| |||||| |||||| |||| ||||||| |
|
|
| T |
37997263 |
tggaagatcaacacacaaagtatcatttccaacatttaaccttttaagtttgagaacaacaagggtttgggagatgaaaat |
37997343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 1239 - 1322
Alignment:
| Q |
100 |
tgtagggttttgagatttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactagggtt |
183 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
1239 |
tgtagggttttgagggacggaagatcacgacacaaattttcaacttcaacttgtaaccattcaagtttgagaacaactagggtt |
1322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 51016819 - 51016916
Alignment:
| Q |
82 |
aaacaaacatatcttagatgtagggttttgagatttggaagatcaacacacaaattttcaccttcaacttttaacctctcaagtttgacaacaactag |
179 |
Q |
| |
|
|||| ||||||| | | |||||||||||||| ||||||||||| |||||| || |||| ||||| |||||| ||||||||||| | ||||||||| |
|
|
| T |
51016819 |
aaaccaacatatttcaaatgtagggttttgaacgatggaagatcaatacacaacttatcactttcaatttttaatctctcaagttttataacaactag |
51016916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University