View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_16 (Length: 454)
Name: NF3693_low_16
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 1911769 - 1912161
Alignment:
| Q |
19 |
cctggatccgtctctgttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcaga |
118 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1911769 |
cctggatccttctctgttaatatccaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacggtaactgtgcaga |
1911868 |
T |
|
| Q |
119 |
aagnnnnnnnnnntgaagcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaaccnnnnnnngaaaggttgtagcttatagagaaaa |
218 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |
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| T |
1911869 |
aagaaaaaaaaa-tgaagcctatcaatgctccctcccctctacttgcaaaggttacattccccaaaccaaaaaaagaaaggttgtagcttataaagaaat |
1911967 |
T |
|
| Q |
219 |
tttcaaaatcaaacactaaccatcaagaaatcatcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1911968 |
tttcaaaatcaaacactaaccatcaagaaatcatcttgaaatttcccagattcaatagcaggcaatcttctcaggagacttgacacttgccttaatagtg |
1912067 |
T |
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| Q |
319 |
aattctcacaaggaacgtcacctgtttttaaacaaaaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1912068 |
aattctcacaaggaacgtcacctgtttttaaacaaaaagtttaaatggtattacttcagggagatacaatataggtaggctatgtataatatat |
1912161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 35 - 416
Target Start/End: Original strand, 1894916 - 1895295
Alignment:
| Q |
35 |
ttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnnntga |
134 |
Q |
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| T |
1894916 |
ttaatatccaacatagttcatgtcatgatatatatgattatgcacacaaaaactcaaataaaccaagcacggtaagcgtgcagaaa----aaaaaaatta |
1895011 |
T |
|
| Q |
135 |
agcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaaccnnnnnnngaaaggttgtagcttatagagaaaatttcaaaatcaaacac |
234 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |
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| T |
1895012 |
agcctatcaatgctccctccccgctacttgcaaaggttatcttccccaaaccaaaaaaagaaaggttgtagcttatagtgaaattttcaaaatcaaacac |
1895111 |
T |
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| Q |
235 |
taaccatcaagaaatcatcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaac |
334 |
Q |
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| T |
1895112 |
tcaccatcaagaaatcatcttgaaatttcccagattcaaaagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaac |
1895211 |
T |
|
| Q |
335 |
gtcacctgttttt-aaacaa-aaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
416 |
Q |
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||||||| ||||| |||||| || | ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1895212 |
gtcacctatttttaaaacaataaggtttaaatggtttaacttcagggagatacaatataggttggctatgtataatatatggtt |
1895295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 35 - 416
Target Start/End: Original strand, 1904362 - 1904741
Alignment:
| Q |
35 |
ttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnnntga |
134 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| ||| | | |
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| T |
1904362 |
ttaatatccaacatagttcatgtcatgatatatatgattatgcacacaaaaactcaaataaaccaaacacggtaaacgtgcaaaaa----aaaaaaatta |
1904457 |
T |
|
| Q |
135 |
agcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaaccnnnnnnngaaaggttgtagcttatagagaaaatttcaaaatcaaacac |
234 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |
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| T |
1904458 |
agcctatcaatgctccctccccgctacttgcaaaggttatcttccccaaaccaaaaaaagaaaggttgtagcttatagtgaaattttcaaaatcaaacac |
1904557 |
T |
|
| Q |
235 |
taaccatcaagaaatcatcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaac |
334 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1904558 |
tcaccatcaagaaatcatcttgaaatttcccagattcaaaagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaac |
1904657 |
T |
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| Q |
335 |
gtcacctgttttt-aaacaa-aaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
416 |
Q |
| |
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||||||| ||||| |||||| || | ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1904658 |
gtcacctatttttaaaacaataaggtttaaatggtttaacttcagggagatacaatataggttggctatgtataatatatggtt |
1904741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 416
Target Start/End: Complemental strand, 2933914 - 2933548
Alignment:
| Q |
35 |
ttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcagaaagnnnnnnnnnntga |
134 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||| | | |
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| T |
2933914 |
ttaatatccaacatagttcatgtcatgatatatatgattatgcacacaaaaactcaaataaaccaagcacggtaaccgtgcaaaaa----aaaaatttta |
2933819 |
T |
|
| Q |
135 |
agcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaaccnnnnnnngaaaggttgtagcttatagagaaaatttcaaaatcaaacac |
234 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |
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| T |
2933818 |
agcctatcaatgctccctccccgctacttgcaaaggttatcttccccaaaccaaaaaaagaaaggttgtagcttatagtgaaattttcaaaatcaa---- |
2933723 |
T |
|
| Q |
235 |
taaccatcaagaaatcatcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtgaattctcacaaggaac |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2933722 |
----------gaaatcatcttgaaatttcccagattcaatagcaggcaatcttctcaggagactcgacacttgccttaatagtaaattctcacaaggaac |
2933633 |
T |
|
| Q |
335 |
gtcacctgtttttaaacaa---aaagattaaatggtattacttcagggagatacaatataggtaggctatgtataatatatggtt |
416 |
Q |
| |
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|||||||||||||||| | || | ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2933632 |
gtcacctgtttttaaaagaattaaggtttaaatggttttacttcagggagatacaatataggcaggctatgtataatatatggtt |
2933548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 1902323 - 1902577
Alignment:
| Q |
19 |
cctggatccgtctctgttaatatcaaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacagtaactgtgcaga |
118 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1902323 |
cctggatccttctctgttaatatccaacatagttcatgccatgatatatatgattatgcacacaaaaactcaaataaactaagcacggtaactgtgcaga |
1902422 |
T |
|
| Q |
119 |
aagnnnnnnnnnntgaagcctgtcaatgctccctcccctctacttgcaaaggttatcttccccaaaccnnnnnnngaaaggttgtagcttatagagaaaa |
218 |
Q |
| |
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||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |
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| T |
1902423 |
aagaaaaaaaaa-tgaagcctatcaatgctccctcccctctacttgcaaaggttacattccccaaaccaaaaaaagaaaggttgtagcttataaagaaat |
1902521 |
T |
|
| Q |
219 |
tttcaaaatcaaacactaaccatcaagaaatcatcttgaaatttcccagattcaat |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1902522 |
tttcaaaatcaaacactaaccatcaagaaatcatcttgaaatttcccagattcaat |
1902577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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