View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3693_low_17 (Length: 453)
Name: NF3693_low_17
Description: NF3693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3693_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 30 - 443
Target Start/End: Original strand, 10650465 - 10650877
Alignment:
| Q |
30 |
tatacatgatgagatctta---cttttacaacatccaaactatcttcaccataattagttgggttaatattannnnnnnnaaaaggcaatcatatatgat |
126 |
Q |
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| T |
10650465 |
tatatatgatgagatcttaatacttttacaacatccaaactatcttcaccataattaggtgggttaatattattttttt-aaaaggtaatcatatatgat |
10650563 |
T |
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| Q |
127 |
ctgtatttgccatattggtttagctcacatccagctaacccaaaatcacacggcttggtgtgttctgttcaggacagatttttgttcattctttggaata |
226 |
Q |
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| T |
10650564 |
ctgtatttgccatattggtttagctcacatccagctaacccaaaatcacacggcttggtgtgttctgttcaggacagatttttgttcattctttggaata |
10650663 |
T |
|
| Q |
227 |
tcaagacatacatgatctgtgtttgtgggacatcatatacataattaagttaccattgttttatatcaaat--aataaaatattaaacagaatttggcac |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||| |
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| T |
10650664 |
tcaagacatacatgatctgtgtttgtgggacatcatatacataattaagttaccattgttttatatcgaataaaataaaatattaaacacaatttagcaa |
10650763 |
T |
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| Q |
325 |
acaacataactttgttgtctatagtcccctatataaaggaaacatttcccttttaaaagtacaagttttgtacccaaatatttttgtcctaaataaagcc |
424 |
Q |
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|| ||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||| ||||||||| || |
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| T |
10650764 |
ac-----aactttgttgtctatagacccctatataaaggaaatacttcccttttaaacgtacaagttttgtaccccaatatttttgtactaaataaaccc |
10650858 |
T |
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| Q |
425 |
ctttttccctttctctctg |
443 |
Q |
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| T |
10650859 |
cttttgccctttctctctg |
10650877 |
T |
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